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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS15220 and PFLU_RS15225 overlap by 11 nucleotides
PFLU_RS15225 and PFLU_RS15230 overlap by 4 nucleotides
PFLU_RS15230 and PFLU_RS15235 overlap by 14 nucleotides
PFLU_RS15235 and PFLU_RS15240 overlap by 4 nucleotides
PFLU_RS15220: PFLU_RS15220 - hypothetical protein, at 3,411,415 to 3,412,092
_RS15220
PFLU_RS15225: PFLU_RS15225 - AMP-binding protein, at 3,412,082 to 3,413,560
_RS15225
PFLU_RS15230: PFLU_RS15230 - iron-containing redox enzyme family protein, at 3,413,557 to 3,414,231
_RS15230
PFLU_RS15235: PFLU_RS15235 - SDR family oxidoreductase, at 3,414,218 to 3,415,027
_RS15235
PFLU_RS15240: PFLU_RS15240 - tetratricopeptide repeat protein, at 3,415,024 to 3,415,668
_RS15240
Group
Condition
PFLU
_RS15220
PFLU
_RS15225
PFLU
_RS15230
PFLU
_RS15235
PFLU
_RS15240
no stress control
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-1.3
-1.6
-0.8
-0.6
-0.2
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
-1.4
-1.7
+0.1
+0.2
-0.6
nitrogen source
nitrate (N); with MOPS
-1.4
-1.0
-0.1
-0.4
-0.6
no stress control
Glycine betaine (C)(N); with TAPS
+0.4
-1.1
-1.3
-0.4
-0.9
stress
malate (C) and Ammonium chloride (N); with TAPS
-1.5
-0.6
-0.3
-0.3
-0.3
pH
Growth at pH9 and (C) Trisodium citrate
-0.1
-1.3
-0.1
-0.4
-1.0
carbon source
L-Carnitine (C)
-1.2
-0.9
-0.6
-0.1
+0.1
carbon source
Xanthosine (C)
-1.5
-1.1
-0.3
-0.1
+0.5
stress
malate (C) and Ammonium chloride (N); with TAPS
-0.2
-1.6
-0.1
+0.1
-0.4
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.0
-1.3
+0.1
-0.3
-0.7
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.8
-1.0
+0.1
-0.5
+0.1
no stress control
Glucose (C) and L-Glutamine (N); with TAPS
-1.3
+0.1
-0.2
+0.3
-0.6
carbon source
m-Inositol (C)
-1.3
-0.9
+0.2
+0.3
+0.3
pH
Growth at pH7 and (C) D-Glucose
-1.1
+0.1
+0.2
+0.4
-0.8
pH
Growth at pH9 and (C) Trisodium citrate
-2.0
+1.3
-0.4
+0.4
-0.2
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+0.3
-1.0
+0.1
+0.4
-0.8
stress
L-Glutamine (C)(N); with TAPS; with chloride
-0.7
+0.4
-0.6
+0.3
-0.3
stress
Betaine (C)(N); with MOPS; with chloride
-0.4
-0.9
+0.3
+0.4
+0.3
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
-0.7
+0.3
-0.8
+0.2
+0.9
carbon source
propionate 20 mM (C)
-1.2
+0.7
+0.3
-0.2
+0.3
carbon source
NAG (C)
-0.8
+0.5
-0.6
+0.4
+0.5
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
+0.3
-1.3
+0.2
+0.4
+0.3
carbon source
m-Inositol (C)
-0.9
-0.5
+0.4
+0.5
+0.5
carbon source
Xanthosine (C)
-0.9
-0.6
+0.7
+0.8
+0.2
carbon source
D,L-Malic Acid (C)
+0.4
-0.7
+0.3
-0.5
+0.8
carbon source
propionate 20 mM (C)
+0.8
-0.8
-0.0
-0.2
+0.6
carbon source
L-Valine 10 mM (C)
+0.5
-0.8
+0.3
+0.3
+0.4
carbon source
acetate (C)
+0.9
+1.1
+0.6
-0.2
-0.3
carbon source
4-Aminobutyric (C)
+0.9
+1.6
+0.3
-0.4
+0.0
carbon source
acetate (C)
+1.0
+1.0
+0.4
+0.2
-0.2
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