Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15200 and PFLU_RS15205 are separated by 34 nucleotidesPFLU_RS15205 and PFLU_RS15210 overlap by 8 nucleotidesPFLU_RS15210 and PFLU_RS15215 are separated by 164 nucleotidesPFLU_RS15215 and PFLU_RS15220 are separated by 191 nucleotides PFLU_RS15200: PFLU_RS15200 - ABC transporter substrate-binding protein, at 3,407,050 to 3,407,982 _RS15200 PFLU_RS15205: PFLU_RS15205 - ribose ABC transporter permease, at 3,408,017 to 3,408,994 _RS15205 PFLU_RS15210: PFLU_RS15210 - sugar ABC transporter ATP-binding protein, at 3,408,987 to 3,410,516 _RS15210 PFLU_RS15215: PFLU_RS15215 - cytochrome b, at 3,410,681 to 3,411,223 _RS15215 PFLU_RS15220: PFLU_RS15220 - hypothetical protein, at 3,411,415 to 3,412,092 _RS15220
Group Condition PFLU_RS15200 PFLU_RS15205 PFLU_RS15210 PFLU_RS15215 PFLU_RS15220
carbon source D-Fructose 10 mM (C) -1.9 -2.9 -1.5 -0.4 +0.1
carbon source D-Fructose (C) -2.8 -0.9 -1.2 -0.1 -0.4
carbon source D-Fructose (C) -2.8 -1.3 -1.1 -0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -5.1 +0.5 -0.4 -0.2 -0.1
carbon source Inosine (C) -0.6 -3.8 -1.1 +0.8 +0.3
carbon source caffeic 2 mM (C) -3.5 -0.9 -0.0 +0.3 -0.1
carbon source D-Fructose 10 mM (C) -1.8 -1.3 -1.3 +0.2 +0.2
carbon source D-Fructose 10 mM (C) -1.6 -0.9 -1.2 -0.1 +0.0
carbon source Phloretic Acid 2 mM (C) +0.1 -3.6 +0.4 -0.4 +0.4
carbon source Xanthosine (C) +0.2 -1.8 -0.2 +0.4 -1.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.6 -0.2 -0.1 +0.5 -1.4
nitrogen source nitrate (N); with MOPS +0.2 -3.0 +0.4 +0.2 -0.4
carbon source Xanthosine 10 mM (C) -2.8 -0.7 +0.0 +0.2 +0.5
carbon source m-Inositol (C) +0.8 -1.0 +0.2 -1.2 -1.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.2 +0.2 -0.3 +0.6 -0.8
carbon source Inosine 10 mM (C) -3.1 +0.9 -0.1 +0.0 +0.3
stress Betaine (C)(N); with TAPS; with chloride -1.8 +1.2 -0.4 -0.2 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.6 -3.0 +0.1 +0.7 -0.7
carbon source Cytidine (C) -1.5 -0.9 -0.3 +0.6 +0.9
carbon source Cytidine 10 mM (C) -1.2 -1.5 +0.2 +0.8 +0.4
pH Growth at pH9 and (C) D-Glucose +0.6 -2.4 +0.4 +0.6 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.8 +1.1 -0.4 +0.3 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.4 -1.9 +0.3 -0.9 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +2.2 -1.7 +0.0 -0.5 -0.3
carbon source Xanthosine (C) +1.0 +0.8 -0.7 -0.5 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.8 -1.1 +0.3 -0.4 -0.5
stress Betaine (C)(N); with MOPS; with chloride +1.1 +0.9 +0.5 -1.4 -0.0
carbon source L-Valine (C) +3.2 -2.6 +0.5 -0.4 +0.5
carbon and nitrogen source NAG carbon and (N) +1.7 -1.0 +0.7 +0.4 -0.2
temperature Growth at 25C +0.8 +2.0 +0.4 +0.3 -0.2
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