Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15095 and PFLU_RS15100 are separated by 214 nucleotidesPFLU_RS15100 and PFLU_RS15105 are separated by 193 nucleotidesPFLU_RS15105 and PFLU_RS15110 are separated by 27 nucleotidesPFLU_RS15110 and PFLU_RS15115 are separated by 82 nucleotides PFLU_RS15095: PFLU_RS15095 - APC family permease, at 3,377,719 to 3,379,167 _RS15095 PFLU_RS15100: PFLU_RS15100 - helix-turn-helix domain-containing protein, at 3,379,382 to 3,380,350 _RS15100 PFLU_RS15105: PFLU_RS15105 - aspartate aminotransferase family protein, at 3,380,544 to 3,381,920 _RS15105 PFLU_RS15110: PFLU_RS15110 - aldehyde dehydrogenase family protein, at 3,381,948 to 3,383,402 _RS15110 PFLU_RS15115: PFLU_RS15115 - cytochrome b, at 3,383,485 to 3,384,048 _RS15115
Group Condition PFLU_RS15095 PFLU_RS15100 PFLU_RS15105 PFLU_RS15110 PFLU_RS15115
carbon source m-Inositol (C) -0.6 -0.1 -0.5 -0.6 -0.7
carbon source p-Coumaric 2 mM (C) -0.3 -1.0 -0.8 +0.2 -0.4
carbon source Shikimic Acid (C) -0.3 +0.0 +0.2 -0.6 -1.4
carbon source Xanthosine (C) +0.4 -1.0 -1.7 +0.5 +0.0
carbon source D,L-Malic Acid (C) +0.5 -0.3 -0.8 -1.0 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 -0.9 -0.8 -0.4 +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.3 +0.6 -0.4 -0.2 -0.2
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.3 -0.2 +0.4 -2.2 +0.2
carbon source L-Carnitine (C) -0.7 -0.2 -0.2 +0.5 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 -1.2 -0.5 +0.0 +0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 -0.6 -0.2 -1.3 +0.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 -1.0 +0.1 +0.2 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 +0.6 +0.4 -1.4 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.4 -0.7 -0.1 +0.7 -0.5
stress Betaine (C)(N); with MOPS; with chloride +0.3 -1.4 +0.6 -0.3 -0.2
stress L-Glutamine (C)(N); with MOPS; with chloride +0.4 +0.7 -0.5 -1.9 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 -0.9 +0.5 +0.8 -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.4 -0.4 +1.0 +0.6 -1.2
pH Growth at pH7 and (C) D-Glucose -0.5 -0.6 -0.0 +1.0 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 -1.1 +0.3 +0.4 +0.7
stress Betaine (C)(N); with TAPS; with chloride -0.9 +0.8 -0.7 +0.6 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -0.3 +0.5 +0.9 -0.5
no stress control L-Glutamine (C)(N); with MOPS +0.1 -0.6 +0.7 -0.4 +0.6
stress Betaine (C)(N); with TAPS; with chloride -1.0 +0.0 +0.7 +0.1 +0.7
carbon source L-Isoleucine (C) +0.3 -0.4 +0.7 +0.6 -0.6
carbon source p-Coumaric 2 mM (C) -0.1 -0.8 +0.1 +0.6 +0.8
carbon source Xanthosine (C) +0.6 +0.1 -0.7 +0.6 +0.4
carbon source L-Valine (C) -0.2 +0.8 -0.8 +1.0 +0.2
stress Betaine (C)(N); with MOPS; with chloride -0.4 +0.9 +0.4 +0.9 -0.3
carbon source L-Carnitine (C) +0.5 +1.0 -0.5 +0.5 +0.0
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