Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15065 and PFLU_RS15070 are separated by 10 nucleotidesPFLU_RS15070 and PFLU_RS15075 are separated by 129 nucleotidesPFLU_RS15075 and PFLU_RS15080 are separated by 91 nucleotidesPFLU_RS15080 and PFLU_RS15085 are separated by 347 nucleotides PFLU_RS15065: PFLU_RS15065 - IclR family transcriptional regulator, at 3,368,696 to 3,369,454 _RS15065 PFLU_RS15070: PFLU_RS15070 - hypothetical protein, at 3,369,465 to 3,370,664 _RS15070 PFLU_RS15075: PFLU_RS15075 - aldehyde dehydrogenase family protein, at 3,370,794 to 3,372,224 _RS15075 PFLU_RS15080: PFLU_RS15080 - APC family permease, at 3,372,316 to 3,373,764 _RS15080 PFLU_RS15085: PFLU_RS15085 - methyl-accepting chemotaxis protein, at 3,374,112 to 3,376,163 _RS15085
Group Condition PFLU_RS15065 PFLU_RS15070 PFLU_RS15075 PFLU_RS15080 PFLU_RS15085
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -3.5 -0.2 -0.2 -0.1 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -3.8 +0.3 +0.2 -0.3 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.6 -0.7 -0.4 +0.1 +0.0
carbon source NAG (C) -3.8 +0.2 +0.3 +0.1 -0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.9 -0.6 +0.1 +0.3 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.3 -0.2 +0.3 -1.0 +0.0
carbon source D-(+)-Galactosamine 10 mM (C) -2.1 -0.0 -0.0 -0.3 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -2.7 +0.5 -0.8 -0.1 -0.0
carbon source NAG (C) -3.1 +0.1 -0.2 +0.2 -0.0
carbon and nitrogen source NAG carbon and (N); with MOPS -3.0 +0.2 +0.3 -0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.9 +0.1 +0.7 +0.0 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -2.0 +0.2 -0.3 -0.6 +0.1
carbon source 4-Hydroxyphenylpropionic (C) 1.5 mM -2.6 -0.2 +0.2 +0.2 -0.1
stress Betaine (C)(N); with TAPS; with chloride -2.3 +0.2 +0.5 -0.5 -0.4
stress L-Glutamine (C)(N); with TAPS; with chloride -2.7 +0.2 -0.4 +0.0 +0.6
stress L-Glutamine (C)(N); with MOPS; with chloride -2.3 -0.1 -0.3 +0.5 -0.2
carbon source L-Isoleucine (C) -2.5 +0.3 -0.1 -0.1 +0.2
carbon source NAG (C) -2.3 +0.1 -0.6 +0.2 +0.4
carbon source NAG 10 mM (C) -2.3 -0.2 +0.4 +0.3 -0.3
pH Growth at pH9 and (C) Trisodium citrate -2.5 -0.1 -0.1 -0.1 +0.6
carbon source NAG (C); with MOPS -2.5 +0.2 +0.4 -0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.4 +0.2 +0.1 -0.2 +0.4
carbon source NAG (C); with MOPS -2.2 +0.1 +0.3 -0.4 +0.3
carbon source acetate 30 mM (C) -2.3 +0.1 +0.6 +0.1 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -2.5 +0.1 +0.3 +0.4 +0.3
carbon and nitrogen source NAG carbon and (N); with MOPS -2.3 +0.4 +0.3 -0.0 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.8 +0.8 -1.1 -0.3 +0.3
carbon source Shikimic Acid (C) -2.1 -0.2 +0.4 +0.6 +0.3
stress Betaine (C)(N); with TAPS; with chloride -2.0 +0.4 +0.1 +0.0 +0.5
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -1.5 -0.6 +0.6 +0.5 +0.0
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