Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS14920 and PFLU_RS14925 are separated by 79 nucleotidesPFLU_RS14925 and PFLU_RS14930 are separated by 92 nucleotidesPFLU_RS14930 and PFLU_RS14935 are separated by 126 nucleotidesPFLU_RS14935 and PFLU_RS14940 are separated by 44 nucleotides PFLU_RS14920: PFLU_RS14920 - methyl-accepting chemotaxis protein, at 3,337,298 to 3,338,971 _RS14920 PFLU_RS14925: PFLU_RS14925 - OprD family porin, at 3,339,051 to 3,340,304 _RS14925 PFLU_RS14930: PFLU_RS14930 - TRAP transporter large permease subunit, at 3,340,397 to 3,341,701 _RS14930 PFLU_RS14935: PFLU_RS14935 - dicarboxylate/amino acid:cation symporter, at 3,341,828 to 3,343,159 _RS14935 PFLU_RS14940: PFLU_RS14940 - 4-oxalomesaconate tautomerase, at 3,343,204 to 3,344,286 _RS14940
Group Condition PFLU_RS14920 PFLU_RS14925 PFLU_RS14930 PFLU_RS14935 PFLU_RS14940
carbon source trans-aconitic 5 mM (C) -0.2 -0.1 -0.6 -2.1 -2.0
carbon source trans-aconitic 5 mM (C) -0.2 -0.6 -0.6 -1.3 -2.1
carbon source trans-aconitic (C) -0.2 -0.2 -0.3 -1.3 -2.5
carbon source trans-aconitic 5 mM (C) -0.1 -0.6 -0.4 -0.9 -1.8
carbon source trans-aconitic (C) -0.1 +0.1 -0.1 -1.0 -2.2
carbon source trans-aconitic (C) -0.1 -0.2 -0.2 -1.1 -1.6
carbon source D-(+)-Galactosamine (C) -0.2 -0.8 -0.7 -0.7 -0.4
carbon source L-Ornithine 10 mM (C) -0.5 -0.2 -0.8 -0.8 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 -0.8 -0.1 -0.5 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.8 -0.6 -0.6 -0.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 -0.6 -0.3 -1.1 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 -0.8 -0.2 -0.1 -0.5
carbon source D-Glucose (C) -0.2 -0.6 -0.4 -0.5 -0.5
stress Betaine (C)(N); with MOPS; with chloride -0.2 -0.6 -0.4 -0.1 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 -0.3 -0.8 -0.2 -0.1
carbon source Shikimic Acid (C) -0.6 -0.4 +0.0 -1.0 -0.0
carbon source m-Inositol (C) -0.3 -0.6 -0.5 -0.7 +0.1
stress Betaine (C)(N); with TAPS; with chloride +0.4 -0.7 -0.2 -0.3 -1.0
no stress control L-Glutamine (C)(N); with MOPS -0.5 -0.3 -0.1 -1.1 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 -0.5 -0.3 -0.5 -0.5
carbon source caffeic 2 mM (C) -0.6 +0.3 -0.3 -0.5 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 -0.1 -0.7 -0.7 +0.6
carbon source propionate 20 mM (C) -0.9 -0.3 -0.2 +0.6 -0.4
pH Growth at pH9 and (C) D-Glucose -0.5 +0.1 +0.4 -1.1 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 -0.3 -1.1 +0.5 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.3 -0.5 -0.6 +0.7
carbon source m-Inositol (C) +0.5 +0.4 -0.4 -0.9 -0.4
carbon source Xanthosine (C) -0.9 +0.4 -0.1 -0.6 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 +0.3 -0.5 +0.3 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.9 +0.3 +0.6 +0.3 +0.2
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