Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS14865 and PFLU_RS30825 are separated by 1088 nucleotidesPFLU_RS30825 and PFLU_RS14875 are separated by 1302 nucleotidesPFLU_RS14875 and PFLU_RS14880 are separated by 479 nucleotidesPFLU_RS14880 and PFLU_RS14895 are separated by 195 nucleotides PFLU_RS14865: PFLU_RS14865 - glucose 1-dehydrogenase, at 3,326,216 to 3,326,965 _RS14865 PFLU_RS30825: PFLU_RS30825 - hypothetical protein, at 3,328,054 to 3,328,371 _RS30825 PFLU_RS14875: PFLU_RS14875 - hypothetical protein, at 3,329,674 to 3,329,961 _RS14875 PFLU_RS14880: PFLU_RS14880 - hypothetical protein, at 3,330,441 to 3,331,367 _RS14880 PFLU_RS14895: PFLU_RS14895 - SMEK domain-containing protein, at 3,331,563 to 3,332,600 _RS14895
Group Condition PFLU_RS14865 PFLU_RS30825 PFLU_RS14875 PFLU_RS14880 PFLU_RS14895
nitrogen source NAG (N); with MOPS +0.1 -1.6 -0.1 -1.5 +0.0
carbon source D-Ribose (C) -0.3 -0.3 +0.2 -1.9 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -1.0 -0.3 -0.9 -0.2
no stress control Glucose (C) and L-Glutamine (N); with TAPS -0.1 -1.0 -0.5 -0.3 -0.8
stress Betaine (C)(N); with MOPS; with chloride +0.2 -1.6 -0.3 -0.7 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -0.6 -0.7 +0.2 -0.6
pH Growth at pH8 and (C) D-Glucose -0.3 -0.4 -0.7 -1.1 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.2 +0.3 -0.1 -2.1 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 -0.7 +0.3 -0.7 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 -0.5 -0.4 -0.9 -0.6
pH Growth at pH7 and (C) D-Glucose +0.4 -0.2 -1.4 -0.5 -0.2
stress L-Glutamine (C)(N); with MOPS; with chloride +0.0 -0.7 +0.4 -0.8 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 -1.3 +0.0 +0.2 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -1.0 +0.5 +0.2 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 +0.1 -1.8 +0.4 +0.4
temperature Growth at 25C; with MOPS +0.2 -1.2 -0.2 -0.5 +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -1.0 +0.3 +0.4 -0.6
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) +0.4 -1.8 +0.7 -0.0 +0.1
carbon source L-Carnitine (C) -0.5 -0.2 +1.5 -0.6 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 +0.0 -1.7 +0.5 +0.5
carbon source L-Arabinose (C); with MOPS +0.6 -0.1 +0.8 -0.9 -0.6
carbon source Shikimic Acid (C) +0.3 +0.9 -0.9 -0.5 +0.1
stress Betaine (C)(N); with MOPS; with chloride -0.2 -0.2 +1.3 -0.3 -0.6
carbon source L-Malic (C) -0.3 +0.5 +1.0 -0.3 -0.5
carbon source Quinic Acid (C) +0.5 -0.3 +1.0 +0.2 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.4 +0.7 +0.9 -0.3 -0.7
nitrogen source nitrate (N); with MOPS +0.5 +0.9 +0.7 -0.3 +0.3
carbon source Inosine (C) +0.7 +0.3 +0.9 -0.3 +0.6
carbon source 4-Aminobutyric (C) +0.4 +1.6 +0.6 -0.2 +0.7
carbon source L-Valine (C) +0.9 +0.3 +1.1 +0.4 +0.5
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