Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS14610 and PFLU_RS14615 are separated by 59 nucleotidesPFLU_RS14615 and PFLU_RS14620 are separated by 172 nucleotidesPFLU_RS14620 and PFLU_RS14625 are separated by 79 nucleotidesPFLU_RS14625 and PFLU_RS14630 are separated by 101 nucleotides PFLU_RS14610: PFLU_RS14610 - 4-hydroxyphenylpyruvate dioxygenase, at 3,265,081 to 3,266,157 _RS14610 PFLU_RS14615: PFLU_RS14615 - EamA family transporter RarD, at 3,266,217 to 3,267,098 _RS14615 PFLU_RS14620: PFLU_RS14620 - aldo/keto reductase, at 3,267,271 to 3,268,281 _RS14620 PFLU_RS14625: PFLU_RS14625 - LysR family transcriptional regulator, at 3,268,361 to 3,269,263 _RS14625 PFLU_RS14630: PFLU_RS14630 - SDR family oxidoreductase, at 3,269,365 to 3,270,069 _RS14630
Group Condition PFLU_RS14610 PFLU_RS14615 PFLU_RS14620 PFLU_RS14625 PFLU_RS14630
carbon source L-tyrosine 10 mM (C) -4.1 -0.0 -0.1 +0.1 -0.0
carbon source L-tyrosine 10 mM (C) -4.0 -0.1 -0.1 -0.0 +0.2
carbon source L-tyrosine 10 mM (C) -3.9 -0.0 +0.0 +0.1 +0.0
carbon source L-tyrosine (C) 10 mM -3.3 -0.0 -0.1 -0.2 +0.0
carbon source L-tyrosine (C) 10 mM -3.2 +0.1 +0.0 +0.0 +0.2
carbon source L-tyrosine (C) 10 mM -2.5 +0.1 +0.1 -0.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 +0.2 -0.4 -0.9 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 -0.2 -0.1 +0.3 -0.9
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -1.0 -0.3 +0.2 -0.3 +0.0
carbon source Ferulic Acid (C) 1.5 mM -0.4 -0.1 +0.3 -0.8 -0.2
carbon source p-Coumaric (C) 5 mM -0.5 -0.3 +0.3 -0.4 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 -0.4 -0.2 +0.2 +0.3
stress Betaine (C)(N); with TAPS; with chloride -0.4 +0.0 +0.1 -0.8 +0.3
carbon source L-Valine (C) -0.0 +0.5 -0.7 -1.5 +0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.4 +0.2 +0.3 -0.7 -0.1
carbon source Shikimic Acid (C) -0.8 -0.4 +0.2 +0.3 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.3 +0.1 +0.4 -1.0 +0.5
carbon source 4-hydroxyphenylacetic 2 mM (C) -0.4 -0.2 +0.2 +0.5 -0.5
stress Betaine (C)(N); with MOPS; with chloride -0.2 +0.4 -0.2 +0.4 -0.6
carbon source Xanthosine (C) +0.1 -0.2 -0.2 +0.7 -0.5
carbon source Inosine (C) +0.1 -0.5 -0.4 +0.4 +0.5
stress Betaine (C)(N); with TAPS; with chloride +0.1 -0.1 +0.3 +0.7 -0.7
carbon source propionate 20 mM (C) +0.4 +0.1 +0.4 -0.3 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 -0.2 +0.4 +0.7 -0.1
carbon source 4-Aminobutyric (C) +0.2 +0.3 -0.4 -0.3 +0.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.8 +0.2 +0.6 +0.3 +0.2
stress Betaine (C)(N); with MOPS; with chloride +0.3 +0.6 -0.1 -0.9 +0.7
stress Betaine (C)(N); with MOPS; with chloride -0.3 -0.0 -0.2 +0.3 +1.1
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) +0.3 +0.1 -0.1 +0.9 +0.3
carbon source L-Valine 10 mM (C) +0.4 +0.4 +0.3 +0.1 +0.4
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