Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS14035 and PFLU_RS14040 are separated by 73 nucleotidesPFLU_RS14040 and PFLU_RS14045 are separated by 3 nucleotidesPFLU_RS14045 and PFLU_RS14050 are separated by 17 nucleotidesPFLU_RS14050 and PFLU_RS14055 are separated by 27 nucleotides PFLU_RS14035: PFLU_RS14035 - hypothetical protein, at 3,145,392 to 3,145,808 _RS14035 PFLU_RS14040: PFLU_RS14040 - phage tail protein, at 3,145,882 to 3,146,538 _RS14040 PFLU_RS14045: PFLU_RS14045 - hypothetical protein, at 3,146,542 to 3,146,922 _RS14045 PFLU_RS14050: PFLU_RS14050 - hypothetical protein, at 3,146,940 to 3,147,242 _RS14050 PFLU_RS14055: PFLU_RS14055 - phage tail tape measure protein, at 3,147,270 to 3,150,323 _RS14055
Group Condition PFLU_RS14035 PFLU_RS14040 PFLU_RS14045 PFLU_RS14050 PFLU_RS14055
stress Betaine (C)(N); with TAPS; with chloride -0.7 -2.0 -0.3 -3.6 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 +0.1 -2.7 -3.7 -0.3
stress Betaine (C)(N); with MOPS; with chloride -0.4 -0.3 -0.8 -4.1 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 -1.5 +0.1 -3.5 +0.2
stress L-Glutamine (C)(N); with MOPS; with chloride -0.2 +0.2 -0.6 -4.4 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.6 -0.2 +0.2 -4.2 -0.0
carbon source L-Valine (C) +0.9 -0.3 -1.4 -3.6 -0.1
no stress control Glucose (C) and L-Glutamine (N); with TAPS -0.0 -0.1 +0.4 -4.4 -0.1
carbon source L-Carnitine (C) -0.0 +0.2 -2.4 -2.0 +0.1
carbon source Sucrose 5 mM (C) -0.5 -1.3 -0.9 -1.0 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 -1.2 -0.6 -1.9 -0.3
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.1 -0.1 -1.0 -2.6 +0.1
carbon source L-Arabinose (C); with MOPS +0.0 -0.6 -0.7 -2.5 +0.2
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.2 +0.4 -0.8 -3.1 +0.3
carbon and nitrogen source NAG carbon and (N); with MOPS -0.1 -0.6 +0.4 -2.9 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 -1.4 +0.6 -2.8 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.2 -0.3 +0.3 -3.3 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 +0.2 -2.7 -0.6 -0.1
carbon source D,L-Malic Acid (C) -0.7 -0.9 +0.7 -1.8 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.9 -0.2 -0.5 -2.3 -0.2
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.8 -0.4 -1.9 +1.1 -0.3
carbon source caffeic 2 mM (C) -0.3 +0.3 -2.5 +0.5 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 +0.7 +0.5 -3.6 +0.4
pH Growth at pH9 and (C) D-Glucose -0.7 -0.8 -1.4 +1.0 -0.1
carbon source D-Glucose (C) +0.5 -0.1 +0.7 -2.6 -0.1
stress Betaine (C)(N); with MOPS; with chloride +0.9 +0.9 -1.1 -2.0 -0.1
no stress control Glycine betaine (C)(N); with TAPS -0.9 +0.4 -0.5 +1.9 -0.1
carbon source L-Valine (C) +1.1 -1.0 +1.6 -0.1 +0.1
no stress control Glucose (C) and L-Glutamine (N); with TAPS -0.1 -0.9 +1.3 +1.9 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8 +0.8 +0.6 +1.4 -0.3
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