Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS13655 and PFLU_RS13660 are separated by 306 nucleotidesPFLU_RS13660 and PFLU_RS13665 are separated by 60 nucleotidesPFLU_RS13665 and PFLU_RS13670 are separated by 160 nucleotidesPFLU_RS13670 and PFLU_RS13675 are separated by 5 nucleotides PFLU_RS13655: PFLU_RS13655 - NAD(P)-binding protein, at 3,087,311 to 3,088,444 _RS13655 PFLU_RS13660: PFLU_RS13660 - hypothetical protein, at 3,088,751 to 3,089,803 _RS13660 PFLU_RS13665: PFLU_RS13665 - MarR family transcriptional regulator, at 3,089,864 to 3,090,298 _RS13665 PFLU_RS13670: PFLU_RS13670 - (2Fe-2S)-binding protein, at 3,090,459 to 3,090,941 _RS13670 PFLU_RS13675: PFLU_RS13675 - molybdopterin-dependent oxidoreductase, at 3,090,947 to 3,094,474 _RS13675
Group Condition PFLU_RS13655 PFLU_RS13660 PFLU_RS13665 PFLU_RS13670 PFLU_RS13675
carbon source Xanthosine (C) -0.0 +0.1 -2.9 -2.2 -0.0
carbon source Guanosine 10 mM (C) -0.3 +0.1 -3.3 -1.4 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 +0.2 -3.9 -0.6 +0.1
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.0 +0.1 -2.8 -0.9 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.7 -0.1 -3.0 -0.1 +0.1
no stress control Glycine betaine (C)(N); with MOPS +0.2 +0.4 -3.4 -1.2 +0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 +0.2 -3.1 -0.6 -0.4
carbon source L-Isoleucine (C) -0.6 +0.2 -2.8 -0.4 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 +0.2 -3.6 +0.5 -0.1
stress Betaine (C)(N); with MOPS; with chloride -0.4 +0.0 -2.4 -0.7 +0.2
carbon source propionate 20 mM (C) -0.1 +0.2 -3.5 +0.0 +0.2
carbon source 4-hydroxyphenylacetic 2 mM (C) +0.0 +0.3 -3.3 -0.4 +0.3
pH Growth at pH9 and (C) Trisodium citrate -0.4 +0.5 -2.2 -0.7 -0.4
stress Betaine (C)(N); with TAPS; with chloride -0.3 +0.2 -3.2 -0.1 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.3 -2.7 -0.7 -0.1
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.1 +0.2 -3.3 +0.2 -0.1
carbon source Phloretic Acid 2 mM (C) +0.4 -0.0 -3.5 +0.2 -0.0
stress Betaine (C)(N); with MOPS; with chloride -0.8 +0.2 -3.1 +0.8 +0.0
carbon source Xanthosine (C) -0.2 -0.5 -2.7 +1.0 -0.2
carbon source propionate 20 mM (C) +0.3 +0.4 -3.6 +0.3 -0.0
stress Betaine (C)(N); with TAPS; with chloride +0.0 -0.1 -3.1 +0.8 +0.1
carbon source trans-aconitic (C) -0.1 +0.0 -3.1 +0.9 -0.0
carbon source L-Carnitine (C) -0.7 +0.1 -2.9 +1.5 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.0 +0.4 -2.8 +1.1 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.0 +0.1 -2.7 +1.4 +0.5
carbon source L-Valine 10 mM (C) +0.3 +0.4 -2.2 +1.1 +0.2
carbon source L-Carnitine (C) -0.4 +0.4 -1.5 +1.4 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.4 +2.0 -1.1 +0.1
carbon source L-Valine 10 mM (C) -0.3 +0.1 +3.2 -0.3 +0.2
carbon source L-Valine 10 mM (C) +0.4 +0.6 +4.0 -0.7 +0.4
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