Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS13450 and PFLU_RS13455 are separated by 101 nucleotidesPFLU_RS13455 and PFLU_RS13460 are separated by 67 nucleotidesPFLU_RS13460 and PFLU_RS13465 are separated by 185 nucleotidesPFLU_RS13465 and PFLU_RS13470 are separated by 121 nucleotides PFLU_RS13450: PFLU_RS13450 - SDR family oxidoreductase, at 3,043,783 to 3,044,529 _RS13450 PFLU_RS13455: PFLU_RS13455 - PLP-dependent aminotransferase family protein, at 3,044,631 to 3,046,040 _RS13455 PFLU_RS13460: PFLU_RS13460 - cytochrome c oxidase accessory protein CcoG, at 3,046,108 to 3,047,517 _RS13460 PFLU_RS13465: PFLU_RS13465 - DUF3203 family protein, at 3,047,703 to 3,047,942 _RS13465 PFLU_RS13470: PFLU_RS13470 - MgtC/SapB family protein, at 3,048,064 to 3,048,555 _RS13470
Group Condition PFLU_RS13450 PFLU_RS13455 PFLU_RS13460 PFLU_RS13465 PFLU_RS13470
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 -0.3 -0.5 -0.2 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -0.2 -0.3 +0.2 -1.0
carbon source NAG (C) +0.3 -0.1 -0.5 +0.7 -1.9
carbon source Phloretic Acid 2 mM (C) -0.7 -0.4 +0.3 -0.2 -0.4
stress Betaine (C)(N); with MOPS; with chloride +0.5 +0.1 -1.0 -0.4 -0.1
carbon source p-Coumaric (C) 5 mM +0.3 -0.1 -0.2 +0.2 -1.1
no stress control Glycine betaine (C)(N); with TAPS +0.3 -0.2 +0.1 +0.1 -1.2
carbon source L-Lysine (C) -0.3 +0.5 -0.7 -0.6 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 +0.3 +0.4 +0.1 -1.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.8 +0.2 -0.5 +0.5 -0.3
carbon source L-Ornithine (C) -0.1 -0.5 -0.4 +0.6 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.4 +0.2 -0.1 +0.1 -1.1
no stress control L-Glutamine (C)(N); with MOPS +0.1 +0.3 -0.4 +0.3 -0.8
pH Growth at pH8 and (C) Trisodium citrate +0.0 +0.5 -0.9 +0.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 +0.2 -0.3 -0.1 +0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 -0.4 +0.3 +0.2 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.6 -0.2 -0.6 -0.5 +1.0
carbon source p-Coumaric (C) 5 mM +0.7 -0.4 -0.5 +0.3 +0.2
stress Betaine (C)(N); with MOPS; with chloride +0.0 +0.7 -0.8 -0.3 +0.7
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.6 +0.3 +0.5 -0.2 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 -0.2 +0.2 +0.5 +0.7
carbon source Xanthosine (C) -0.2 +0.0 +0.1 +0.7 +1.0
carbon source m-Inositol (C) +0.8 +0.3 -0.0 -0.1 +0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.7 +0.4 +0.6 -0.1 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 +0.3 -0.1 +0.5 +1.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 +0.1 +0.3 +0.6 +0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.8 +0.1 +0.2 +0.5 +0.9
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 +0.0 +0.2 +0.7 +1.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 +0.2 +0.7 +0.9 +0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.5 +0.2 +0.9 +0.5 +1.4
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