Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS13425 and PFLU_RS13430 overlap by 4 nucleotidesPFLU_RS13430 and PFLU_RS13435 overlap by 4 nucleotidesPFLU_RS13435 and PFLU_RS13440 are separated by 83 nucleotidesPFLU_RS13440 and PFLU_RS13445 are separated by 216 nucleotides PFLU_RS13425: PFLU_RS13425 - MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit, at 3,032,341 to 3,033,645 _RS13425 PFLU_RS13430: PFLU_RS13430 - MdtB/MuxB family multidrug efflux RND transporter permease subunit, at 3,033,642 to 3,036,743 _RS13430 PFLU_RS13435: PFLU_RS13435 - MMPL family transporter, at 3,036,740 to 3,039,847 _RS13435 PFLU_RS13440: PFLU_RS13440 - efflux transporter outer membrane subunit, at 3,039,931 to 3,041,415 _RS13440 PFLU_RS13445: PFLU_RS13445 - bifunctional diguanylate cyclase/phosphodiesterase, at 3,041,632 to 3,043,728 _RS13445
Group Condition PFLU_RS13425 PFLU_RS13430 PFLU_RS13435 PFLU_RS13440 PFLU_RS13445
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.8 -0.7 -0.8 -0.8 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.9 -0.5 -0.7 -0.9 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.9 -0.5 -0.5 -0.7 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.6 -0.5 -0.8 -0.5 -0.0
stress Sucrose (C) and Ammonium chloride (N); with TAPS -0.6 -0.6 -0.5 -0.6 -0.1
stress Sucrose (C) and Ammonium chloride (N); with TAPS -0.5 -0.6 -0.8 -0.5 +0.1
stress Sucrose (C) and Ammonium chloride (N); with TAPS -0.5 -0.5 -0.5 -0.5 +0.0
stress malate (C) and Ammonium chloride (N); with TAPS -0.7 -0.3 -0.4 -0.5 +0.1
stress malate (C) and Ammonium chloride (N); with TAPS -0.5 -0.4 -0.4 -0.5 -0.1
stress Sucrose (C) and Ammonium chloride (N); with TAPS -0.7 -0.3 -0.5 -0.3 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.3 +0.0 -0.2 -0.3 +0.0
stress malate (C) and Ammonium chloride (N); with TAPS -0.5 -0.4 -0.3 -0.5 -0.1
stress malate (C) and Ammonium chloride (N); with TAPS -0.5 -0.2 -0.4 -0.6 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 -0.5 -0.4 -0.6 -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 -0.2 -0.4 -1.3 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.1 -0.2 -0.9 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -0.2 -0.2 -0.5 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -0.1 -0.1 -0.9 +0.0
carbon source Shikimic Acid (C) -0.2 +0.3 -0.4 -0.5 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.4 -0.3 -0.3 +0.2
carbon source acetate 30 mM (C) +0.3 -0.5 -0.6 -0.5 +0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 -0.2 -0.6 -0.6 -0.1
carbon source acetate 30 mM (C) +0.5 -0.7 -0.7 -0.5 +0.2
carbon source propionate 20 mM (C) +0.9 -0.4 -0.8 -0.7 -0.1
carbon source propionate 20 mM (C) +0.8 -0.4 -0.3 -0.6 +0.1
carbon source caffeic 2 mM (C) +0.2 -0.2 -0.3 -0.5 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.3 -0.0 -0.3 +0.5 +0.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.4 +0.4 +0.1 +0.8 -0.1
carbon source L-Valine 10 mM (C) +0.7 +0.6 +0.3 +0.3 +0.1
carbon source L-Valine 10 mM (C) +0.7 +0.2 +0.6 +0.7 -0.2
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