Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS13420 and PFLU_RS13425 are separated by 231 nucleotidesPFLU_RS13425 and PFLU_RS13430 overlap by 4 nucleotidesPFLU_RS13430 and PFLU_RS13435 overlap by 4 nucleotidesPFLU_RS13435 and PFLU_RS13440 are separated by 83 nucleotides PFLU_RS13420: PFLU_RS13420 - thiol peroxidase, at 3,031,609 to 3,032,109 _RS13420 PFLU_RS13425: PFLU_RS13425 - MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit, at 3,032,341 to 3,033,645 _RS13425 PFLU_RS13430: PFLU_RS13430 - MdtB/MuxB family multidrug efflux RND transporter permease subunit, at 3,033,642 to 3,036,743 _RS13430 PFLU_RS13435: PFLU_RS13435 - MMPL family transporter, at 3,036,740 to 3,039,847 _RS13435 PFLU_RS13440: PFLU_RS13440 - efflux transporter outer membrane subunit, at 3,039,931 to 3,041,415 _RS13440
Group Condition PFLU_RS13420 PFLU_RS13425 PFLU_RS13430 PFLU_RS13435 PFLU_RS13440
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -0.8 -0.7 -0.8 -0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 -0.9 -0.5 -0.7 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.3 -0.5 -0.4 -0.3 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.1 -0.2 -0.5 -0.4 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.8 -0.5 -0.1 -0.2 -0.9
stress Sucrose (C) and Ammonium chloride (N); with TAPS +0.0 -0.5 -0.6 -0.8 -0.5
stress Sucrose (C) and Ammonium chloride (N); with TAPS -0.4 -0.5 -0.5 -0.5 -0.5
stress Sucrose (C) and Ammonium chloride (N); with TAPS -0.0 -0.6 -0.6 -0.5 -0.6
stress Glucose (C) and Betaine (N); with TAPS; with chloride -1.4 -0.2 -0.1 -0.2 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 -0.6 -0.5 -0.8 -0.5
stress malate (C) and Ammonium chloride (N); with TAPS -0.2 -0.7 -0.3 -0.4 -0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.5 -0.9 -0.5 -0.5 -0.7
carbon source 4-Aminobutyric (C) -1.7 +0.1 -0.3 -0.2 +0.0
stress Betaine (C)(N); with TAPS; with chloride -1.7 +0.4 +0.0 -0.1 -0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.0 +0.1 -0.2 -0.4 -1.3
stress Sucrose (C) and Ammonium chloride (N); with TAPS +0.3 -0.7 -0.3 -0.5 -0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 -1.3 +0.0 -0.2 -0.3
carbon source acetate 30 mM (C) +0.3 +0.5 -0.7 -0.7 -0.5
carbon source acetate 30 mM (C) +0.3 +0.3 -0.5 -0.6 -0.5
carbon source propionate 20 mM (C) -0.4 +0.8 -0.4 -0.3 -0.6
stress Betaine (C)(N); with TAPS; with chloride -1.5 +0.6 +0.1 +0.1 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.8 -0.7 -0.2 -0.2 -0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.6 +0.5 -0.1 +0.1 +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.5 +0.2 -0.2 -0.6 -0.6
carbon source propionate 20 mM (C) +0.7 +0.9 -0.4 -0.8 -0.7
carbon source p-Coumaric (C) 5 mM -1.2 +0.2 +0.3 +0.1 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.0 -0.4 -0.4 -0.2 -0.2
pH Growth at pH9 and (C) Trisodium citrate -1.0 +0.5 +0.1 +0.2 +0.1
carbon source L-Valine 10 mM (C) -0.4 +0.7 +0.2 +0.6 +0.7
carbon source L-Valine 10 mM (C) +0.5 +0.7 +0.6 +0.3 +0.3
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