Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS13300 and PFLU_RS13305 overlap by 4 nucleotidesPFLU_RS13305 and PFLU_RS13310 are separated by 50 nucleotidesPFLU_RS13310 and PFLU_RS13315 are separated by 138 nucleotidesPFLU_RS13315 and PFLU_RS13320 are separated by 91 nucleotides PFLU_RS13300: PFLU_RS13300 - DNA-directed RNA polymerase sigma-70 factor, at 3,008,411 to 3,009,079 _RS13300 PFLU_RS13305: PFLU_RS13305 - sigma-70 family RNA polymerase sigma factor, at 3,009,076 to 3,009,591 _RS13305 PFLU_RS13310: PFLU_RS13310 - DUF3455 domain-containing protein, at 3,009,642 to 3,010,163 _RS13310 PFLU_RS13315: PFLU_RS13315 - class I SAM-dependent methyltransferase, at 3,010,302 to 3,011,072 _RS13315 PFLU_RS13320: PFLU_RS13320 - sulfite exporter TauE/SafE family protein, at 3,011,164 to 3,011,949 _RS13320
Group Condition PFLU_RS13300 PFLU_RS13305 PFLU_RS13310 PFLU_RS13315 PFLU_RS13320
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.8 -0.2 -1.1 -1.5 -0.1
pH Growth at pH9 and (C) Trisodium citrate -3.5 -0.4 +0.2 +0.5 -0.1
stress Betaine (C)(N); with TAPS; with chloride -2.2 -0.9 +0.3 +0.2 -0.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -2.0 -0.1 -1.7 +0.4
carbon source L-Valine (C) -1.6 -0.5 -0.1 -0.8 -0.1
stress L-Glutamine (C)(N); with MOPS; with chloride -2.0 -1.0 +0.2 -0.2 -0.1
pH Growth at pH8 and (C) Trisodium citrate -2.9 +0.2 +0.6 -1.4 +0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.6 -0.5 -0.5 -2.2 -0.3
carbon source NAG (C) -2.6 +0.1 -0.3 +0.2 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -2.1 -0.7 +0.0 +0.6 -0.2
stress Glucose (C) and Betaine (N); with TAPS; with chloride -2.4 +0.4 +0.1 +0.0 -0.5
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS -1.8 -0.7 +0.1 +0.4 -0.2
pH Growth at pH9 and (C) Trisodium citrate -2.4 -0.4 -0.5 +0.9 +0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.4 -1.3 +0.3 -0.0 +0.5
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -2.3 +0.6 -0.3 +0.3 +0.2
carbon source Xanthosine (C) -1.1 -1.2 +0.8 -0.2 +0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -1.6 -0.4 +0.5 +0.8 -0.6
carbon source Xanthosine (C) +0.7 -1.4 -0.7 +0.2 +0.6
no stress control Glycine betaine (C)(N); with MOPS -0.8 +0.4 +0.6 +0.8 -1.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +1.4 +0.3 +0.1 -1.9 +0.5
stress Betaine (C)(N); with MOPS; with chloride -1.3 +0.5 +0.4 +0.3 +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 +1.1 -0.4 +0.7 +0.1
no stress control Glycine betaine (C)(N); with MOPS -1.5 +0.7 -0.1 +1.3 +0.4
carbon source p-Coumaric (C) 5 mM +0.8 -1.1 -0.2 +1.1 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.0 +0.8 +0.3 -0.9 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.7 -0.8 +0.3 +1.0 +0.4
carbon source Choline chloride 10 mM (C) +0.9 +0.5 +0.3 +1.1 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.9 +0.7 -0.6 +0.7 +0.6
stress Betaine (C)(N); with MOPS; with chloride +1.8 -0.2 +0.0 +0.6 +0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 +0.8 +0.4 +1.0 +0.6
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