Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS13255 and PFLU_RS13260 are separated by 82 nucleotidesPFLU_RS13260 and PFLU_RS13265 are separated by 110 nucleotidesPFLU_RS13265 and PFLU_RS13270 are separated by 54 nucleotidesPFLU_RS13270 and PFLU_RS13275 are separated by 73 nucleotides PFLU_RS13255: PFLU_RS13255 - TIM barrel protein, at 2,997,144 to 2,997,926 _RS13255 PFLU_RS13260: PFLU_RS13260 - LacI family DNA-binding transcriptional regulator, at 2,998,009 to 2,999,076 _RS13260 PFLU_RS13265: PFLU_RS13265 - LysE family translocator, at 2,999,187 to 2,999,774 _RS13265 PFLU_RS13270: PFLU_RS13270 - AraC family transcriptional regulator, at 2,999,829 to 3,000,668 _RS13270 PFLU_RS13275: PFLU_RS13275 - DUF1345 domain-containing protein, at 3,000,742 to 3,001,383 _RS13275
Group Condition PFLU_RS13255 PFLU_RS13260 PFLU_RS13265 PFLU_RS13270 PFLU_RS13275
carbon source 2-Keto-D-gluconic hemicalcium salt 10 mM (C) -3.6 -4.6 +0.5 +0.2 +0.1
carbon source 2-Keto-D-gluconic hemicalcium salt 10 mM (C) -3.4 -4.6 +0.5 +0.4 +0.4
carbon source 2-Keto-D-gluconic hemicalcium salt 10 mM (C) -3.8 -3.5 +0.6 +0.3 +0.4
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -2.6 -3.0 +0.1 +0.4 +0.4
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -2.7 -2.6 +0.4 +0.0 +0.3
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -3.0 -2.5 +0.5 +0.2 +0.3
carbon source Inosine (C) -1.0 -0.6 -0.4 -0.5 -0.4
carbon source Inosine (C) -0.3 -1.2 -0.1 -0.6 -0.6
carbon source 4-Aminobutyric (C) -0.6 -0.7 +0.2 -0.2 -0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 -0.9 +0.2 -0.0 -0.1
nitrogen source nitrate (N); with MOPS +0.1 -0.5 -0.2 -0.6 -0.6
carbon source Xanthosine (C) -0.2 -0.7 -0.5 +0.3 -0.6
carbon source Shikimic Acid (C) -1.3 +0.6 -0.1 -0.5 -0.3
stress malate (C) and Ammonium chloride (N); with TAPS -0.2 -0.4 +0.3 -0.1 -1.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.1 -1.6 -0.5 +0.4 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 +0.3 +0.2 +0.1 -1.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -1.0 +0.2 +0.4 -0.3
carbon source L-Valine (C) -1.0 +0.5 -0.1 +0.5 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 -1.1 +0.6 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 +0.8 -0.5 -0.1 -0.1
stress Betaine (C)(N); with MOPS; with chloride -0.8 -0.4 +0.2 +0.1 +0.4
carbon source Phloretic Acid 2 mM (C) -0.7 +0.3 -0.1 +0.5 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.8 +0.2 +0.1 -1.1
stress Betaine (C)(N); with MOPS; with chloride -0.7 +0.8 +0.2 +0.0 -0.3
carbon source L-Carnitine (C) +0.4 +0.2 -0.3 +0.4 -0.6
stress Betaine (C)(N); with MOPS; with chloride +0.3 +0.6 +0.7 -0.0 -0.9
no stress control Glucose (C) and nitrate (N); with MOPS +0.8 +0.9 -0.3 +0.2 -0.0
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.8 +0.3 -0.3 +0.5 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.0 +0.9 +0.4 +0.4 -0.2
no stress control Glucose (C) and nitrate (N); with MOPS +0.6 +0.8 -0.1 +0.1 +0.3
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