Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS12845 and PFLU_RS12850 are separated by 295 nucleotidesPFLU_RS12850 and PFLU_RS12855 are separated by 59 nucleotidesPFLU_RS12855 and PFLU_RS12860 are separated by 11 nucleotidesPFLU_RS12860 and PFLU_RS12865 overlap by 4 nucleotides PFLU_RS12845: PFLU_RS12845 - GntP family permease, at 2,897,421 to 2,898,812 _RS12845 PFLU_RS12850: PFLU_RS12850 - sigma-54-dependent Fis family transcriptional regulator, at 2,899,108 to 2,900,508 _RS12850 PFLU_RS12855: PFLU_RS12855 - ABC transporter ATP-binding protein, at 2,900,568 to 2,902,139 _RS12855 PFLU_RS12860: PFLU_RS12860 - ABC transporter permease, at 2,902,151 to 2,903,176 _RS12860 PFLU_RS12865: PFLU_RS12865 - microcin C ABC transporter permease YejB, at 2,903,173 to 2,904,234 _RS12865
Group Condition PFLU_RS12845 PFLU_RS12850 PFLU_RS12855 PFLU_RS12860 PFLU_RS12865
temperature shift Temperature shift 30_to_34 -0.1 +0.1 -1.3 -1.3 -1.1
temperature shift Temperature shift 30_to_34 +0.3 +0.5 -1.0 -1.6 -1.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.9 +0.3 -0.7 -0.9 -0.8
carbon source L-Carnitine (C) -1.4 -0.5 -0.5 -0.3 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.9 +0.2 -1.0 -0.4 -0.7
temperature shift Temperature shift 30_to_34 -0.1 +0.3 -0.8 -0.9 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 -0.7 -0.9 -0.4 -0.3
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride -1.0 +0.5 -0.3 -0.7 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.6 -1.1 -0.7 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 +0.4 -0.2 -0.8 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.6 -1.8 +0.3 +0.3 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.7 +0.7 -0.3 -0.3 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.0 +0.7 +0.9 -0.7 -0.3
carbon source Xanthosine (C) +0.8 +0.8 -0.1 -0.0 -0.8
carbon source L-Valine (C) -0.8 +0.9 -0.3 +0.8 +0.2
stress Betaine (C)(N); with MOPS; with chloride -0.6 +0.6 -0.1 +0.6 +0.7
carbon source L-Valine 10 mM (C) +0.3 +0.7 +0.9 +0.1 -0.6
stress Betaine (C)(N); with TAPS; with chloride +0.4 -0.7 +0.7 +0.5 +0.9
carbon source p-Coumaric (C) 5 mM -0.2 -0.2 +0.4 +0.8 +1.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.1 +0.1 +0.6 +0.9 +0.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.2 +0.3 +0.5 +0.9 +1.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.2 +0.1 +0.7 +0.8 +1.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.5 +0.4 +0.4 +0.6 +0.6
carbon source Ferulic Acid (C) 1.5 mM +0.1 +0.1 +0.6 +0.7 +1.2
carbon source Ferulic Acid (C) 1.5 mM -0.3 +0.2 +0.6 +1.0 +1.3
carbon source p-Coumaric (C) 5 mM +0.1 +0.4 +0.7 +0.6 +1.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 +0.3 +1.7 +1.0 +2.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.1 -0.1 +1.6 +2.2 +1.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.4 -0.1 +1.9 +1.7 +1.9
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.8 +0.2 +1.6 +1.6 +2.0
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