Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS12695 and PFLU_RS12700 are separated by 91 nucleotidesPFLU_RS12700 and PFLU_RS12705 are separated by 4 nucleotidesPFLU_RS12705 and PFLU_RS12710 are separated by 109 nucleotidesPFLU_RS12710 and PFLU_RS12715 are separated by 66 nucleotides PFLU_RS12695: PFLU_RS12695 - TonB-dependent siderophore receptor, at 2,868,447 to 2,870,948 _RS12695 PFLU_RS12700: PFLU_RS12700 - hypothetical protein, at 2,871,040 to 2,871,369 _RS12700 PFLU_RS12705: PFLU_RS12705 - LysR family transcriptional regulator, at 2,871,374 to 2,872,273 _RS12705 PFLU_RS12710: PFLU_RS12710 - AbrB family transcriptional regulator, at 2,872,383 to 2,873,435 _RS12710 PFLU_RS12715: PFLU_RS12715 - fumarylacetoacetate hydrolase family protein, at 2,873,502 to 2,874,197 _RS12715
Group Condition PFLU_RS12695 PFLU_RS12700 PFLU_RS12705 PFLU_RS12710 PFLU_RS12715
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 -0.4 -0.6 -1.3 -3.3
stress Betaine (C)(N); with TAPS; with chloride -0.2 +0.1 +0.1 -1.6 -4.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.2 -0.0 -0.3 -1.0 -3.9
temperature Growth at 25C +0.1 -0.2 -0.1 -0.6 -3.0
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride -0.2 -0.4 +0.3 -0.2 -3.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.0 -0.0 -0.9 +0.8 -3.7
stress L-Glutamine (C)(N); with TAPS; with chloride -0.1 -0.2 -0.2 -0.6 -2.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.0 +0.2 -0.3 -1.2 -2.3
carbon source 4-Guanidinobutyric (C) -0.1 -0.5 +0.4 -0.5 -2.6
pH Growth at pH7 and (C) D-Glucose +0.2 -0.5 -0.1 -0.2 -2.8
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS +0.2 -0.3 -0.6 -0.8 -1.9
stress L-Glutamine (C)(N); with MOPS; with chloride +0.2 +0.2 -0.1 -0.0 -3.6
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.1 -0.3 +0.6 -3.7 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 -0.1 -0.4 -0.0 -3.0
no stress control L-Glutamine (C)(N); with MOPS +0.1 -0.5 +0.5 -0.0 -3.3
carbon source Inosine 10 mM (C) +0.2 +0.0 +0.2 -0.0 -3.4
nitrogen source Ammonium chloride (N); with MOPS -0.2 +0.1 +0.5 -0.4 -2.9
temperature shift Temperature shift 10_to_25; with MOPS +0.2 +0.2 -0.2 -0.0 -3.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 +0.2 +0.3 +0.4 -3.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -0.1 +0.0 +0.3 -3.2
stress Betaine (C)(N); with TAPS; with chloride +0.0 +0.1 +0.2 -0.3 -3.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -0.1 -0.4 +1.2 -3.6
lb outgrowth control more dilute start LB outgrowth control more dilute start -0.0 +0.2 +0.0 +0.3 -3.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 +0.3 +0.3 +0.2 -2.8
carbon source caffeic 2 mM (C) +0.3 +0.0 +0.1 +0.7 -3.2
carbon source Xanthosine (C) -0.0 +0.3 +0.1 +1.2 -3.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 -0.3 -1.6 -0.8 +0.8
stress Betaine (C)(N); with MOPS; with chloride +0.4 -0.1 +0.5 +1.0 -3.2
carbon source Phloretic Acid 2 mM (C) +0.1 -0.3 +0.5 +1.1 -1.7
carbon source Shikimic Acid (C) +0.1 +0.3 +0.3 -2.2 +1.8
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