Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS12685 and PFLU_RS12690 overlap by 4 nucleotidesPFLU_RS12690 and PFLU_RS12695 are separated by 253 nucleotidesPFLU_RS12695 and PFLU_RS12700 are separated by 91 nucleotidesPFLU_RS12700 and PFLU_RS12705 are separated by 4 nucleotides PFLU_RS12685: PFLU_RS12685 - hypothetical protein, at 2,863,230 to 2,863,562 _RS12685 PFLU_RS12690: PFLU_RS12690 - RHS repeat protein, at 2,863,559 to 2,868,193 _RS12690 PFLU_RS12695: PFLU_RS12695 - TonB-dependent siderophore receptor, at 2,868,447 to 2,870,948 _RS12695 PFLU_RS12700: PFLU_RS12700 - hypothetical protein, at 2,871,040 to 2,871,369 _RS12700 PFLU_RS12705: PFLU_RS12705 - LysR family transcriptional regulator, at 2,871,374 to 2,872,273 _RS12705
Group Condition PFLU_RS12685 PFLU_RS12690 PFLU_RS12695 PFLU_RS12700 PFLU_RS12705
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.5 -0.7 -0.0 -0.3 -1.6
stress Betaine (C)(N); with TAPS; with chloride -2.9 -0.1 -0.1 +0.1 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -2.2 -0.5 +0.1 -0.1 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.6 -0.1 -0.2 -0.4 -0.6
carbon source acetate (C) -1.7 -0.2 -0.3 +0.1 -0.8
carbon source Cytidine 10 mM (C) -1.8 -0.1 +0.0 -0.6 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.6 -0.1 +0.0 -0.0 -0.9
carbon source D-Glucose (C) -1.7 -0.3 -0.0 -0.1 -0.3
stress Betaine (C)(N); with TAPS; with chloride -1.4 -0.1 -0.1 -0.6 -0.2
carbon source m-Inositol (C) -1.4 -0.1 -0.1 -0.5 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.8 -0.2 -0.1 +0.0 -0.2
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -1.4 -0.2 -0.1 -0.1 -0.3
stress L-Glutamine (C)(N); with TAPS; with chloride -1.7 +0.1 -0.3 +0.1 -0.2
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride -1.5 -0.1 -0.2 -0.4 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.7 -0.2 -0.2 -0.6 +0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.8 -0.3 +0.1 +0.0 +0.0
stress Betaine (C)(N); with MOPS; with chloride -2.0 -0.1 +0.0 +0.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.2 -0.2 +0.3 -0.1 -0.4
no stress control Glucose (C) and nitrate (N); with TAPS -2.1 -0.0 +0.0 +0.2 +0.5
stress L-Glutamine (C)(N); with MOPS; with chloride -1.9 +0.0 +0.0 +0.2 +0.4
pH Growth at pH9 and (C) D-Glucose -1.7 -0.1 +0.1 -0.0 +0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.3 -0.2 -0.2 +0.3 +0.3
carbon source Choline chloride 10 mM (C) -1.5 -0.1 +0.0 +0.4 +0.2
carbon source Shikimic Acid (C) -1.9 +0.2 +0.1 +0.3 +0.3
stress Glucose (C) and Betaine (N); with MOPS; with chloride -1.6 +0.2 +0.2 -0.1 +0.2
carbon source L-Lysine (C) -1.2 -0.1 -0.0 -0.3 +0.7
stress Betaine (C)(N); with MOPS; with chloride -1.1 -0.3 +0.4 -0.1 +0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 -0.3 +0.4 -0.1 +0.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.9 +0.1 +0.2 -0.2 +0.7
carbon source L-Isoleucine (C) +1.8 +0.1 -0.0 +0.3 -0.2
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