Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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Top 30 experiments (either direction), sorted by average fitness

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500 ntPFLU_RS12680 and PFLU_RS12685 are separated by 28 nucleotidesPFLU_RS12685 and PFLU_RS12690 overlap by 4 nucleotidesPFLU_RS12690 and PFLU_RS12695 are separated by 253 nucleotidesPFLU_RS12695 and PFLU_RS12700 are separated by 91 nucleotides PFLU_RS12680: PFLU_RS12680 - DUF3995 domain-containing protein, at 2,862,764 to 2,863,201 _RS12680 PFLU_RS12685: PFLU_RS12685 - hypothetical protein, at 2,863,230 to 2,863,562 _RS12685 PFLU_RS12690: PFLU_RS12690 - RHS repeat protein, at 2,863,559 to 2,868,193 _RS12690 PFLU_RS12695: PFLU_RS12695 - TonB-dependent siderophore receptor, at 2,868,447 to 2,870,948 _RS12695 PFLU_RS12700: PFLU_RS12700 - hypothetical protein, at 2,871,040 to 2,871,369 _RS12700
Group Condition PFLU_RS12680 PFLU_RS12685 PFLU_RS12690 PFLU_RS12695 PFLU_RS12700
stress Betaine (C)(N); with TAPS; with chloride -0.3 -2.9 -0.1 -0.1 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.8 -1.3 +0.1 +0.1 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.3 -1.7 -0.2 -0.2 -0.6
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 -1.6 -0.1 -0.2 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 -2.2 -0.5 +0.1 -0.1
stress Betaine (C)(N); with TAPS; with chloride -1.6 -1.3 +0.2 +0.0 +0.1
carbon source L-Lysine (C) -0.6 -1.2 -0.1 -0.0 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 -1.8 -0.2 -0.1 +0.0
carbon source Cytidine 10 mM (C) +0.4 -1.8 -0.1 +0.0 -0.6
no stress control Glucose (C) and nitrate (N); with TAPS -0.3 -2.1 -0.0 +0.0 +0.2
no stress control Glucose (C) and L-Glutamine (N); with TAPS -0.7 -1.1 +0.3 -0.1 -0.4
temperature Growth at 25C -1.5 -0.9 +0.4 +0.1 -0.2
stress Betaine (C)(N); with TAPS; with chloride +0.3 -1.4 -0.1 -0.1 -0.6
carbon source D-Glucose (C) +0.3 -1.7 -0.3 -0.0 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.6 -1.5 -0.7 -0.0 -0.3
carbon source m-Inositol (C) -1.1 -0.8 -0.0 -0.3 +0.4
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride +0.3 -1.5 -0.1 -0.2 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 -1.8 -0.3 +0.1 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.9 -0.4 -0.1 +0.3 +0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 -1.3 -0.2 -0.2 +0.3
stress Betaine (C)(N); with MOPS; with chloride -0.0 -2.0 -0.1 +0.0 +0.4
stress Betaine (C)(N); with MOPS; with chloride -0.2 -1.5 -0.1 -0.2 +0.3
carbon source Choline chloride 10 mM (C) -0.5 -1.5 -0.1 +0.0 +0.4
carbon source Shikimic Acid (C) -0.3 -1.9 +0.2 +0.1 +0.3
carbon source acetate (C) +0.4 -1.7 -0.2 -0.3 +0.1
stress L-Glutamine (C)(N); with MOPS; with chloride +0.1 -1.9 +0.0 +0.0 +0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -1.6 +0.3 +0.1 +0.2 -0.2
carbon source D-(+)-Galactosamine (C) +0.7 -1.5 -0.1 +0.1 -0.2
carbon source 2-Keto-D-gluconic hemicalcium salt (C) +0.6 -1.4 +0.3 -0.2 +0.1
carbon source L-Isoleucine (C) +0.3 +1.8 +0.1 -0.0 +0.3
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