Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS12640 and PFLU_RS12645 are separated by 221 nucleotidesPFLU_RS12645 and PFLU_RS12650 are separated by 67 nucleotidesPFLU_RS12650 and PFLU_RS12655 are separated by 110 nucleotidesPFLU_RS12655 and PFLU_RS12660 are separated by 396 nucleotides PFLU_RS12640: PFLU_RS12640 - methyl-accepting chemotaxis protein, at 2,855,173 to 2,856,762 _RS12640 PFLU_RS12645: PFLU_RS12645 - DUF2789 domain-containing protein, at 2,856,984 to 2,857,220 _RS12645 PFLU_RS12650: PFLU_RS12650 - hypothetical protein, at 2,857,288 to 2,857,518 _RS12650 PFLU_RS12655: PFLU_RS12655 - hypothetical protein, at 2,857,629 to 2,857,904 _RS12655 PFLU_RS12660: PFLU_RS12660 - hypothetical protein, at 2,858,301 to 2,858,771 _RS12660
Group Condition PFLU_RS12640 PFLU_RS12645 PFLU_RS12650 PFLU_RS12655 PFLU_RS12660
no stress control Glycine betaine (C)(N); with MOPS +0.0 N.D. -1.4 -1.5 -1.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.9 N.D. -0.6 -0.3 -2.5
no stress control Glycine betaine (C)(N); with TAPS -0.1 N.D. -0.6 -1.4 -2.0
carbon source 4-Hydroxybenzoic Acid (C) 1.5 mM +0.2 N.D. -0.2 -0.6 -3.5
carbon source L-Isoleucine (C) -0.2 N.D. -1.3 -0.3 -2.2
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.1 N.D. -0.9 -0.7 -2.2
stress Betaine (C)(N); with TAPS; with chloride -0.1 N.D. -1.7 -0.3 -1.7
stress Betaine (C)(N); with MOPS; with chloride -0.2 N.D. -1.5 -0.3 -1.7
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.3 N.D. -1.1 -1.2 -1.2
carbon source propionate (C) +0.2 N.D. -2.3 +0.3 -1.9
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.2 N.D. +0.3 -1.4 -2.5
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS +0.2 N.D. -0.9 -0.0 -2.7
carbon source 2-Keto-D-gluconic hemicalcium salt (C) +0.3 N.D. -1.9 -0.0 -1.8
carbon source Glycerol (C) +0.2 N.D. -1.4 -0.5 -1.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 N.D. -0.9 +0.3 -2.4
carbon source L-Isoleucine (C) -0.4 N.D. -2.0 +0.5 -1.1
carbon source 4-Hydroxyphenylpropionic (C) 1.5 mM -0.0 N.D. +0.3 -0.1 -3.1
carbon source L-Valine (C) +0.4 N.D. -1.3 -1.3 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.3 N.D. -1.4 +0.3 -1.7
stress Glucose (C) and Betaine (N); with TAPS; with chloride +0.1 N.D. +0.6 -2.2 -1.0
pH Growth at pH8 and (C) D-Glucose +0.2 N.D. -3.1 +0.6 -0.2
stress Betaine (C)(N); with MOPS; with chloride +0.4 N.D. -1.6 +0.3 -1.3
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -0.2 N.D. +0.5 +0.2 -2.7
carbon and nitrogen source NAG carbon and (N) -0.1 N.D. +0.8 -1.3 -1.7
stress Betaine (C)(N); with TAPS; with chloride +0.7 N.D. +0.2 -1.0 -1.7
carbon source caffeic 2 mM (C) +0.6 N.D. -2.6 +1.7 -1.4
stress Betaine (C)(N); with TAPS; with chloride -0.0 N.D. +1.3 -0.4 -2.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.2 N.D. +1.5 +0.0 -2.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 N.D. +1.8 +0.2 -1.5
carbon source NAG (C) +0.3 N.D. +0.7 +1.4 -1.6
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