Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS12385 and PFLU_RS12390 are separated by 234 nucleotidesPFLU_RS12390 and PFLU_RS12395 are separated by 2 nucleotidesPFLU_RS12395 and PFLU_RS12400 are separated by 15 nucleotidesPFLU_RS12400 and PFLU_RS12405 are separated by 3 nucleotides PFLU_RS12385: PFLU_RS12385 - methyl-accepting chemotaxis protein, at 2,745,825 to 2,747,465 _RS12385 PFLU_RS12390: PFLU_RS12390 - acetamidase/formamidase family protein, at 2,747,700 to 2,748,929 _RS12390 PFLU_RS12395: PFLU_RS12395 - zinc ribbon domain-containing protein, at 2,748,932 to 2,749,279 _RS12395 PFLU_RS12400: PFLU_RS12400 - aliphatic amidase, at 2,749,295 to 2,750,338 _RS12400 PFLU_RS12405: PFLU_RS12405 - ATP-dependent Clp protease ATP-binding subunit, at 2,750,342 to 2,751,307 _RS12405
Group Condition PFLU_RS12385 PFLU_RS12390 PFLU_RS12395 PFLU_RS12400 PFLU_RS12405
no stress control L-Glutamine (C)(N); with MOPS -3.6 -0.6 -0.7 +0.0 -1.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.0 -0.5 -4.2 -0.4 +0.7
pH Growth at pH6 and (C) D-Glucose -1.2 +0.0 -1.8 -0.2 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 -0.4 -2.7 +0.2 +0.7
carbon source D-Mannitol (C) +0.5 -0.0 -2.3 -0.2 -0.4
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride -2.4 +0.1 -0.5 +0.0 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.3 +0.2 -1.5 -0.0 +0.6
stress L-Glutamine (C)(N); with MOPS; with chloride +1.0 -0.2 -2.1 -0.1 +0.3
pH Growth at pH8 and (C) Trisodium citrate +1.4 -0.3 -2.4 -0.2 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.6 +0.2 +1.1 -0.2 -0.3
carbon source L-Isoleucine (C) +1.2 +0.1 -1.9 +0.0 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +1.5 +0.3 -1.7 -0.0 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.9 +0.2 +1.6 +0.2 -0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.0 -0.6 +1.8 +0.0 +0.7
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.2 +0.3 +2.9 -0.0 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.2 +0.1 +5.1 -0.1 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.3 -0.1 +4.9 -0.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.1 +0.2 +5.4 -0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.0 +0.1 +5.4 -0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.0 +0.1 +5.3 -0.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.3 +0.3 +5.2 +0.0 -0.0
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.3 +0.5 +5.7 -0.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.5 +0.2 +8.2 -0.0 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 +0.2 +6.5 +0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 +0.3 +6.7 -0.1 +0.2
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.2 +0.5 +6.2 +0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.2 +0.4 +7.8 -0.1 +0.4
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) +1.5 +0.7 +5.8 +0.0 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 +0.8 +9.3 -0.0 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 +0.7 +12.2 +0.3 -0.2
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