Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS12355 and PFLU_RS12360 overlap by 4 nucleotidesPFLU_RS12360 and PFLU_RS12365 are separated by 243 nucleotidesPFLU_RS12365 and PFLU_RS12370 are separated by 54 nucleotidesPFLU_RS12370 and PFLU_RS12375 overlap by 26 nucleotides PFLU_RS12355: PFLU_RS12355 - ABC transporter permease, at 2,740,940 to 2,741,785 _RS12355 PFLU_RS12360: PFLU_RS12360 - ABC transporter ATP-binding protein, at 2,741,782 to 2,742,810 _RS12360 PFLU_RS12365: PFLU_RS12365 - IclR family transcriptional regulator, at 2,743,054 to 2,743,884 _RS12365 PFLU_RS12370: PFLU_RS12370 - response regulator transcription factor, at 2,743,939 to 2,744,604 _RS12370 PFLU_RS12375: PFLU_RS12375 - hypothetical protein, at 2,744,579 to 2,744,983 _RS12375
Group Condition PFLU_RS12355 PFLU_RS12360 PFLU_RS12365 PFLU_RS12370 PFLU_RS12375
carbon and nitrogen source NAG carbon and (N) -0.3 -0.5 -0.6 -0.3 -2.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.6 -1.1 -0.1 -0.4
pH Growth at pH9 and (C) D-Glucose -0.0 -0.0 -0.7 -0.2 -1.3
no stress control Glycine betaine (C)(N); with TAPS -0.4 -0.6 -0.6 -0.2 -0.3
carbon source NAG (C) -0.2 -1.1 -0.2 -0.2 -0.2
carbon and nitrogen source NAG carbon and (N); with MOPS -0.1 -0.8 -0.2 +0.0 -0.8
carbon source L-Valine 10 mM (C) -0.2 -0.9 +0.0 -0.3 -0.5
nitrogen source nitrate (N); with MOPS +0.2 -0.4 -1.1 -0.6 +0.2
temperature Growth at 25C +0.1 -0.1 -1.3 +0.4 -0.7
carbon source acetate 30 mM (C) +0.2 +0.0 +0.1 -0.2 -1.6
stress Betaine (C)(N); with TAPS; with chloride -0.2 -0.2 -1.5 -0.3 +0.7
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.3 -0.6 +0.2 -0.7
carbon source L-Carnitine (C) +0.1 -0.5 +0.3 -0.3 -0.9
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 -0.9 +0.8 -0.1 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.0 -0.3 +0.6 -0.3 -0.9
carbon source L-Lysine (C) +0.2 -0.2 -0.9 +0.5 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.5 -0.3 +0.1 -1.0
carbon source 4-Guanidinobutyric (C) +0.1 -0.2 -1.4 +0.3 +0.7
carbon source Glycerol 20 mM (C) -0.1 +0.4 +0.5 -0.1 -0.9
carbon source D-Glucuronic 10 mM (C) -0.2 +0.3 +0.4 +0.1 -0.9
carbon source Shikimic Acid (C) -0.4 -0.5 -0.3 +0.1 +1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 -0.9 +0.4 -0.1 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.5 -0.8 +0.4 +0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 -0.1 -0.4 +0.2 +1.0
carbon and nitrogen source NAG carbon and (N) +0.0 -0.7 +0.3 +0.2 +0.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.2 -0.5 -0.1 +0.5 +0.8
carbon source Inosine (C) +0.5 -0.6 -0.0 +0.3 +0.8
carbon source Xanthosine (C) +0.5 -0.1 -0.2 -0.2 +1.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.5 +0.5 +0.8 +0.4 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.5 -0.0 +0.6 +0.4 +0.7
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