Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS12150 and PFLU_RS12155 are separated by 96 nucleotidesPFLU_RS12155 and PFLU_RS12160 are separated by 17 nucleotidesPFLU_RS12160 and PFLU_RS12165 are separated by 81 nucleotidesPFLU_RS12165 and PFLU_RS12170 are separated by 45 nucleotides PFLU_RS12150: PFLU_RS12150 - aromatic alcohol reductase, at 2,695,489 to 2,696,436 _RS12150 PFLU_RS12155: PFLU_RS12155 - helix-turn-helix transcriptional regulator, at 2,696,533 to 2,696,991 _RS12155 PFLU_RS12160: PFLU_RS12160 - IS66 family transposase, at 2,697,009 to 2,698,538 _RS12160 PFLU_RS12165: PFLU_RS12165 - IS66 family insertion sequence element accessory protein TnpB, at 2,698,620 to 2,698,853 _RS12165 PFLU_RS12170: PFLU_RS12170 - transcriptional regulator, at 2,698,899 to 2,699,289 _RS12170
Group Condition PFLU_RS12150 PFLU_RS12155 PFLU_RS12160 PFLU_RS12165 PFLU_RS12170
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.6 -1.5 -0.3 N.D. -0.2
carbon source Shikimic Acid (C) -0.5 -1.0 -0.3 N.D. -0.6
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.2 +0.2 +0.3 N.D. -1.6
carbon source succinate (C); with MOPS -0.2 -1.0 -0.7 N.D. -0.1
carbon source D-Mannitol (C) -0.3 -1.0 -0.2 N.D. -0.6
temperature Growth at 25C -0.9 -0.2 -0.3 N.D. -0.7
carbon source L-Ornithine 10 mM (C) -0.1 -0.6 -0.8 N.D. -0.4
nitrogen source NAG (N); with MOPS -0.8 -0.2 -0.8 N.D. +0.1
no stress control Glycine betaine (C)(N); with MOPS -0.5 -0.5 +0.3 N.D. -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -1.6 -0.5 N.D. +0.3
carbon source D-Mannitol (C) +0.2 -0.4 -0.5 N.D. -1.0
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS -0.4 -0.8 +0.2 N.D. -0.5
carbon source L-Arabinose (C) -0.5 +0.2 -0.6 N.D. -0.6
carbon source Sucrose 5 mM (C) +0.4 -0.2 -0.7 N.D. -1.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.1 +0.1 +0.1 N.D. -1.5
carbon source succinate (C) -0.4 -0.4 -0.7 N.D. +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -0.3 +0.4 N.D. -0.8
stress Betaine (C)(N); with TAPS; with chloride -0.8 -0.3 -0.3 N.D. +0.4
no stress control Glucose (C) and nitrate (N); with TAPS +0.4 -0.9 +0.1 N.D. -0.4
carbon source Xanthosine (C) +0.4 +0.2 -0.8 N.D. -0.5
carbon source L-Carnitine (C) -0.3 +0.6 +0.1 N.D. -0.9
no stress control Glycine betaine (C)(N); with TAPS -0.3 +0.6 +0.0 N.D. -0.8
stress Betaine (C)(N); with MOPS; with chloride +0.3 -1.0 +0.4 N.D. -0.1
carbon source caffeic 2 mM (C) -1.0 +0.4 +0.4 N.D. -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 +0.3 +0.2 N.D. -1.1
carbon source L-Carnitine (C) +0.3 +0.4 +0.1 N.D. -1.2
pH Growth at pH9 and (C) Trisodium citrate +0.0 -0.9 -0.2 N.D. +1.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 -0.9 +0.5 N.D. +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 +0.5 +0.8 N.D. -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 -0.4 +0.4 N.D. +0.8
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