Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11820 and PFLU_RS11825 are separated by 146 nucleotidesPFLU_RS11825 and PFLU_RS11830 are separated by 165 nucleotidesPFLU_RS11830 and PFLU_RS11835 are separated by 217 nucleotidesPFLU_RS11835 and PFLU_RS11840 overlap by 4 nucleotides PFLU_RS11820: PFLU_RS11820 - hypothetical protein, at 2,620,862 to 2,621,758 _RS11820 PFLU_RS11825: PFLU_RS11825 - NAD(P)-dependent alcohol dehydrogenase, at 2,621,905 to 2,622,972 _RS11825 PFLU_RS11830: PFLU_RS11830 - hypothetical protein, at 2,623,138 to 2,623,437 _RS11830 PFLU_RS11835: PFLU_RS11835 - hypothetical protein, at 2,623,655 to 2,624,299 _RS11835 PFLU_RS11840: PFLU_RS11840 - RNA polymerase sigma factor, at 2,624,296 to 2,624,841 _RS11840
Group Condition PFLU_RS11820 PFLU_RS11825 PFLU_RS11830 PFLU_RS11835 PFLU_RS11840
carbon source Shikimic Acid (C) +0.2 +0.3 -3.2 -2.2 -1.7
nitrogen source NAG (N); with MOPS -0.1 -0.4 -1.7 -0.3 -2.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.0 -2.7 -0.8 -1.2
carbon source Choline chloride 10 mM (C) +0.1 +0.1 -3.1 +0.1 -1.7
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS -0.2 -1.3 +0.4 -0.2 -2.9
pH Growth at pH8 and (C) D-Glucose -0.9 -0.4 -2.8 +0.2 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.5 +0.1 -0.4 -3.2
nitrogen source nitrate (N); with MOPS -1.4 +0.3 -1.5 -0.6 -0.4
carbon source Phloretic Acid 2 mM (C) -0.9 +0.1 -1.0 +0.3 -2.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.4 -0.2 -1.7 -1.6 +0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.9 -0.9 -2.2 -0.2 +1.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.6 -0.3 -0.7 +0.4 -1.5
carbon source propionate 20 mM (C) -0.6 +0.1 -0.5 +0.4 -2.1
no stress control L-Glutamine (C)(N); with TAPS -0.7 +0.5 -0.5 -1.6 -0.4
carbon source caffeic 2 mM (C) -0.3 -0.7 +0.0 +0.4 -2.1
carbon source m-Inositol (C) -0.1 +0.0 -1.1 +0.4 -1.6
carbon source D-Glucosamine Hydrochloride 10 mM (C) +0.2 -0.4 -2.0 -0.9 +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +0.4 +0.0 -1.2 -1.7
stress Betaine (C)(N); with TAPS; with chloride +0.7 -0.4 +0.6 -0.6 -2.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 +0.3 +0.4 +0.3 -2.4
carbon source L-Valine (C) +0.1 +0.7 +0.5 -0.2 -2.6
carbon source L-Carnitine (C) +0.5 -1.3 -2.1 +0.4 +1.0
pH Growth at pH9 and (C) Trisodium citrate +0.6 +0.5 -1.0 -0.3 -0.9
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 -1.5 +1.2 -0.3 +0.1
carbon source Phloretic Acid 2 mM (C) -0.4 +0.7 +0.8 +0.3 -2.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.0 +1.0 +0.6 -0.6 -1.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 -0.2 -1.0 +1.0 -0.8
pH Growth at pH9 and (C) Trisodium citrate -0.5 +1.0 -1.3 -0.1 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -1.0 +0.9 +1.0 +0.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.6 +0.3 +0.6 -1.0 +1.1
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