Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11805 and PFLU_RS11810 are separated by 236 nucleotidesPFLU_RS11810 and PFLU_RS11815 are separated by 88 nucleotidesPFLU_RS11815 and PFLU_RS11820 overlap by 4 nucleotidesPFLU_RS11820 and PFLU_RS11825 are separated by 146 nucleotides PFLU_RS11805: PFLU_RS11805 - DoxX family protein, at 2,617,944 to 2,618,330 _RS11805 PFLU_RS11810: PFLU_RS11810 - alpha/beta hydrolase, at 2,618,567 to 2,619,385 _RS11810 PFLU_RS11815: PFLU_RS11815 - alginate export family protein, at 2,619,474 to 2,620,865 _RS11815 PFLU_RS11820: PFLU_RS11820 - hypothetical protein, at 2,620,862 to 2,621,758 _RS11820 PFLU_RS11825: PFLU_RS11825 - NAD(P)-dependent alcohol dehydrogenase, at 2,621,905 to 2,622,972 _RS11825
Group Condition PFLU_RS11805 PFLU_RS11810 PFLU_RS11815 PFLU_RS11820 PFLU_RS11825
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.9 -0.1 +0.3 -1.2 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -0.2 +0.1 -0.7 -1.0
carbon source Ferulic Acid 2 mM (C) -1.5 -0.0 -0.1 -0.3 -0.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 +0.2 -0.2 -1.1 -0.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 +0.1 +0.4 -0.3 -1.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 -0.1 -0.2 -0.5 -1.5
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.7 -0.6 +0.4 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.2 +0.4 -0.3 -0.4 +0.1
no stress control L-Glutamine (C)(N); with TAPS -0.8 -0.9 +0.4 -0.7 +0.5
nitrogen source nitrate (N); with MOPS +0.3 -0.4 -0.1 -1.4 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.7 +0.2 +0.0 +0.4 -0.2
pH Growth at pH9 and (C) Trisodium citrate -1.4 -0.9 -0.0 +0.6 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.2 -0.8 -0.1 +0.5 +0.6
stress Betaine (C)(N); with MOPS; with chloride +0.7 -0.5 +0.1 -0.2 -1.1
stress Betaine (C)(N); with TAPS; with chloride -0.6 +0.3 +0.4 -0.8 -0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +0.0 +0.5 -0.9 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.6 -0.2 +0.4 +0.6 -1.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 +0.6 -0.1 -0.8 +0.3
carbon source Shikimic Acid (C) -0.2 +0.8 +0.1 +0.2 -1.2
carbon source L-Valine (C) -1.0 +0.2 +0.1 +0.9 -0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.9 -0.8 -0.0 +0.3 +1.2
pH Growth at pH6 and (C) Trisodium citrate +0.7 +0.5 +0.2 -0.6 -0.6
carbon source L-Carnitine (C) +0.8 +0.6 -0.2 +0.5 -1.3
carbon source m-Inositol (C) -0.7 -0.3 +0.1 +0.8 +0.4
pH Growth at pH8 and (C) D-Glucose +0.5 -0.8 +0.7 -0.1 +0.3
stress Betaine (C)(N); with MOPS; with chloride +0.5 +0.5 +0.2 -0.8 +0.5
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.4 +0.4 +0.1 +0.8 +0.5
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.7 +0.6 +0.2 +0.6 +0.8
carbon source Inosine (C) +1.3 -0.0 +0.4 +0.7 -0.7
stress Betaine (C)(N); with TAPS; with chloride +0.6 +0.4 +0.5 +0.7 +0.5
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