Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11785 and PFLU_RS11790 are separated by 53 nucleotidesPFLU_RS11790 and PFLU_RS11795 overlap by 4 nucleotidesPFLU_RS11795 and PFLU_RS11800 are separated by 112 nucleotidesPFLU_RS11800 and PFLU_RS11805 are separated by 77 nucleotides PFLU_RS11785: PFLU_RS11785 - IS3 family transposase, at 2,613,450 to 2,614,597 _RS11785 PFLU_RS11790: PFLU_RS11790 - zinc-binding dehydrogenase, at 2,614,651 to 2,615,649 _RS11790 PFLU_RS11795: PFLU_RS11795 - YbfB/YjiJ family MFS transporter, at 2,615,646 to 2,616,878 _RS11795 PFLU_RS11800: PFLU_RS11800 - LysR family transcriptional regulator, at 2,616,991 to 2,617,866 _RS11800 PFLU_RS11805: PFLU_RS11805 - DoxX family protein, at 2,617,944 to 2,618,330 _RS11805
Group Condition PFLU_RS11785 PFLU_RS11790 PFLU_RS11795 PFLU_RS11800 PFLU_RS11805
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -3.8 +0.3 +0.1 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. +0.6 -0.4 -1.1 -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -0.8 +0.3 -2.1 +0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -1.2 -0.7 +0.5 -1.0
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS N.D. -0.9 -0.4 -0.4 -0.7
carbon source Ferulic Acid 2 mM (C) N.D. +0.1 -0.3 -0.4 -1.5
carbon source D-Glucosamine Hydrochloride 10 mM (C) N.D. -1.1 +0.3 -1.3 -0.0
no stress control L-Glutamine (C)(N); with TAPS N.D. -1.3 +0.1 -0.9 -0.0
no stress control L-Glutamine (C)(N); with MOPS N.D. -2.4 +0.3 -0.3 +0.4
stress Betaine (C)(N); with TAPS; with chloride N.D. -1.2 +0.4 -0.6 -0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -1.0 +0.2 -0.3 -0.9
stress Betaine (C)(N); with MOPS; with chloride N.D. -1.2 +0.6 +0.2 -1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. +0.7 -0.2 -0.1 -1.9
stress Betaine (C)(N); with MOPS; with chloride N.D. +0.3 -0.9 +0.2 -1.3
carbon source L-Valine (C) N.D. +0.3 +0.1 -0.9 -1.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -1.7 -0.1 +0.7 -0.3
carbon source p-Coumaric 2 mM (C) N.D. -1.2 -0.1 -0.7 +0.6
stress Betaine (C)(N); with MOPS; with chloride N.D. -1.9 +0.2 -0.3 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. +0.4 -0.4 +0.4 -1.2
carbon source Inosine (C) N.D. -0.9 +0.1 -1.4 +1.3
carbon source Xanthosine (C) N.D. -2.0 +0.2 +1.0 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.2 +0.9 -0.2 -1.2
carbon source L-Carnitine (C) N.D. -1.2 +0.9 -0.4 +0.2
pH Growth at pH9 and (C) Trisodium citrate N.D. -0.5 +0.6 +0.9 -1.4
carbon source propionate 20 mM (C) N.D. -0.8 -0.3 +1.0 -0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.9 -0.2 +1.2 -0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +1.0 -0.1 -1.1 +0.3
carbon source L-Carnitine (C) N.D. +0.8 +0.6 -0.7 +0.8
stress L-Glutamine (C)(N); with MOPS; with chloride N.D. +1.1 +0.4 +0.8 -0.3
pH Growth at pH9 and (C) Trisodium citrate N.D. +1.1 +0.4 +0.9 -0.1
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