Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11760 and PFLU_RS11765 are separated by 173 nucleotidesPFLU_RS11765 and PFLU_RS11770 overlap by 4 nucleotidesPFLU_RS11770 and PFLU_RS11775 are separated by 78 nucleotidesPFLU_RS11775 and PFLU_RS11785 are separated by 882 nucleotides PFLU_RS11760: PFLU_RS11760 - GlxA family transcriptional regulator, at 2,608,934 to 2,609,878 _RS11760 PFLU_RS11765: PFLU_RS11765 - TetR/AcrR family transcriptional regulator, at 2,610,052 to 2,610,681 _RS11765 PFLU_RS11770: PFLU_RS11770 - type 1 glutamine amidotransferase domain-containing protein, at 2,610,678 to 2,611,355 _RS11770 PFLU_RS11775: PFLU_RS11775 - alkene reductase, at 2,611,434 to 2,612,567 _RS11775 PFLU_RS11785: PFLU_RS11785 - IS3 family transposase, at 2,613,450 to 2,614,597 _RS11785
Group Condition PFLU_RS11760 PFLU_RS11765 PFLU_RS11770 PFLU_RS11775 PFLU_RS11785
carbon source Phloretic Acid 2 mM (C) -2.7 -0.2 -3.3 +0.2 N.D.
carbon source Xanthosine (C) -3.9 -0.0 -0.6 +0.1 N.D.
nitrogen source NAG (N); with MOPS -4.3 -0.3 +0.9 -0.3 N.D.
pH Growth at pH9 and (C) Trisodium citrate -2.2 -0.4 -0.6 -0.5 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.3 -0.7 -1.1 -0.2 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.7 -0.1 -1.3 -0.1 N.D.
carbon source L-Valine (C) -1.3 -0.6 -1.3 +0.1 N.D.
stress Betaine (C)(N); with MOPS; with chloride -2.2 -0.1 -0.8 +0.2 N.D.
stress Betaine (C)(N); with TAPS; with chloride -3.0 -0.2 +0.6 -0.1 N.D.
carbon source m-Inositol (C) -1.8 -0.1 -0.8 -0.0 N.D.
carbon source Xanthosine (C) -1.3 -0.2 -0.6 -0.4 N.D.
carbon source caffeic 2 mM (C) -1.6 -0.2 -0.8 +0.2 N.D.
carbon source pyruvate 20 mM (C) -0.7 +0.0 -1.6 -0.0 N.D.
no stress control L-Glutamine (C)(N); with MOPS +0.1 -0.1 -2.1 +0.0 N.D.
stress L-Glutamine (C)(N); with MOPS; with chloride -1.1 -0.1 -0.9 +0.2 N.D.
carbon source Phloretic Acid 2 mM (C) -1.4 +0.3 -1.1 +0.3 N.D.
carbon source 4-Aminobutyric (C) -1.8 -0.3 -0.2 +0.3 N.D.
pH Growth at pH8 and (C) Trisodium citrate -1.9 -0.3 +0.7 +0.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.3 +0.0 +0.9 +0.0 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.8 +0.6 -1.1 -0.1 N.D.
carbon source L-Carnitine (C) -1.7 -0.1 +0.8 +0.2 N.D.
carbon source m-Inositol (C) -1.8 +0.1 +0.7 +0.2 N.D.
carbon source Fumarate (C) -1.6 -0.1 +0.9 -0.0 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.1 +0.0 -1.5 -0.3 N.D.
carbon source L-Valine (C) -1.8 -0.2 +1.3 +0.5 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.0 -1.1 +0.3 -0.4 N.D.
stress L-Glutamine (C)(N); with TAPS; with chloride -1.2 -0.1 +1.1 -0.0 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.1 -0.0 +1.7 +0.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +2.0 -0.2 -0.8 -0.0 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.1 -0.2 +0.8 +0.3 N.D.
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