Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11495 and PFLU_RS11500 are separated by 6 nucleotidesPFLU_RS11500 and PFLU_RS11505 overlap by 16 nucleotidesPFLU_RS11505 and PFLU_RS11510 are separated by 228 nucleotidesPFLU_RS11510 and PFLU_RS11515 are separated by 69 nucleotides PFLU_RS11495: PFLU_RS11495 - ABC transporter permease, at 2,551,518 to 2,552,327 _RS11495 PFLU_RS11500: PFLU_RS11500 - ABC transporter permease, at 2,552,334 to 2,553,263 _RS11500 PFLU_RS11505: PFLU_RS11505 - ABC transporter substrate-binding protein, at 2,553,248 to 2,554,273 _RS11505 PFLU_RS11510: PFLU_RS11510 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 2,554,502 to 2,555,611 _RS11510 PFLU_RS11515: PFLU_RS11515 - DUF1330 domain-containing protein, at 2,555,681 to 2,555,974 _RS11515
Group Condition PFLU_RS11495 PFLU_RS11500 PFLU_RS11505 PFLU_RS11510 PFLU_RS11515
carbon source Shikimic Acid (C) N.D. +0.0 -2.7 -1.4 -0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.2 -1.4 -2.7 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. +0.1 -2.2 -1.4 -0.6
stress Betaine (C)(N); with MOPS; with chloride N.D. -0.2 -1.0 -1.7 -1.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -0.9 -0.2 -1.9 -0.7
carbon source m-Inositol (C) N.D. -0.2 -1.5 -1.3 -0.5
carbon source 4-Hydroxybenzoic Acid 2 mM (C) N.D. -0.1 -2.0 -1.2 -0.2
nitrogen source Ammonium chloride (N); with MOPS N.D. -0.6 -0.8 -1.3 -0.6
carbon source 2-Keto-D-gluconic hemicalcium salt (C) N.D. -0.2 -1.6 -1.4 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -0.5 -3.0 +0.0 +0.3
carbon source D-Xylose (C) N.D. +0.4 -2.6 -1.4 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. +0.1 -2.9 +0.2 -0.5
no stress control Glycine betaine (C)(N); with TAPS N.D. -0.4 -2.6 +0.1 +0.1
no stress control Glycine betaine (C)(N); with MOPS N.D. -0.7 -2.6 +0.2 +0.4
pH Growth at pH9 and (C) Trisodium citrate N.D. +0.3 -2.6 +0.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -0.4 -2.2 -0.5 +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -0.4 -2.1 -0.8 +0.9
carbon source L-Carnitine (C) N.D. +0.4 -1.2 -1.5 +0.1
carbon source Phloretic Acid 2 mM (C) N.D. -0.3 -1.3 -1.3 +0.7
carbon source caffeic 2 mM (C) N.D. -0.4 -1.7 -0.8 +0.8
stress Betaine (C)(N); with MOPS; with chloride N.D. -0.1 -2.5 -0.1 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. +0.6 -1.9 -1.1 +0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -0.4 -2.2 +0.8 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. +0.3 -1.7 +0.6 -1.0
stress Betaine (C)(N); with MOPS; with chloride N.D. -0.1 -2.8 +0.7 +0.5
stress Betaine (C)(N); with TAPS; with chloride N.D. +0.0 -2.9 +0.2 +0.9
stress Betaine (C)(N); with MOPS; with chloride N.D. +0.3 -2.1 -0.3 +0.5
carbon source Phloretic Acid 2 mM (C) N.D. -0.2 -1.9 +1.2 -0.1
carbon source Inosine (C) N.D. +0.4 +0.9 -2.3 +0.7
carbon source Xanthosine (C) N.D. +0.0 +1.3 +0.9 -1.2
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