Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11430 and PFLU_RS11435 are separated by 16 nucleotidesPFLU_RS11435 and PFLU_RS11440 are separated by 74 nucleotidesPFLU_RS11440 and PFLU_RS11445 are separated by 2 nucleotidesPFLU_RS11445 and PFLU_RS11450 are separated by 20 nucleotides PFLU_RS11430: PFLU_RS11430 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 2,536,644 to 2,537,636 _RS11430 PFLU_RS11435: PFLU_RS11435 - APC family permease, at 2,537,653 to 2,539,332 _RS11435 PFLU_RS11440: PFLU_RS11440 - DUF1989 domain-containing protein, at 2,539,407 to 2,541,716 _RS11440 PFLU_RS11445: PFLU_RS11445 - NAD(P)/FAD-dependent oxidoreductase, at 2,541,719 to 2,543,086 _RS11445 PFLU_RS11450: PFLU_RS11450 - formyltetrahydrofolate deformylase, at 2,543,107 to 2,543,973 _RS11450
Group Condition PFLU_RS11430 PFLU_RS11435 PFLU_RS11440 PFLU_RS11445 PFLU_RS11450
carbon source L-Valine (C) +0.1 -0.2 -1.5 -0.7 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0 -1.0 +0.1 -0.1 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.3 -0.0 -0.6 -0.6
carbon and nitrogen source NAG carbon and (N) -0.1 -0.7 -0.2 -0.2 -0.8
stress Betaine (C)(N); with TAPS; with chloride -0.8 +0.4 -0.7 -0.0 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 -0.4 -0.7 -0.9 +0.3
stress L-Glutamine (C)(N); with TAPS; with chloride -0.1 -0.2 -0.3 -0.5 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 +0.0 -0.8 -0.2 -1.0
nitrogen source nitrate (N); with MOPS -0.3 -0.4 -0.8 +0.1 -0.3
pH Growth at pH8 and (C) Trisodium citrate -1.2 +0.3 -0.3 +0.6 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 +0.3 -0.5 -0.4 -0.6
temperature Growth at 25C -0.8 +0.3 +0.1 -0.6 -0.3
carbon source Phloretic Acid 2 mM (C) -0.5 -0.4 -0.5 -0.3 +0.4
nitrogen source nitrate (N); with MOPS -1.2 +0.1 -0.5 +0.0 +0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 +0.2 -1.1 +0.3 -0.0
carbon source propionate 20 mM (C) +0.3 -0.6 -0.5 +0.3 -0.3
temperature Growth at 25C -0.2 +0.3 -0.5 +0.5 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.9 +0.2 -0.4 +0.0 +0.4
nitrogen source NAG (N); with MOPS +0.4 -0.0 +0.4 -0.7 -0.6
carbon source L-Carnitine (C) +0.1 +0.4 -1.2 -0.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 +0.2 +0.3 -0.4 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.0 +0.3 -1.0 -0.2 +0.8
carbon source Xanthosine (C) +0.6 +0.5 -0.2 -0.1 -0.9
carbon source Inosine (C) +0.8 -0.5 +0.4 -0.3 -0.6
no stress control Glycine betaine (C)(N); with MOPS +0.4 +0.2 -1.1 +0.2 +0.3
stress Betaine (C)(N); with TAPS; with chloride +0.5 +0.3 -0.5 -0.4 +0.4
carbon source D-Glucosamine Hydrochloride 10 mM (C) -0.2 +0.1 -0.7 +0.5 +0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.8 +0.6 +0.1 +0.2 -0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.5 +0.1 +0.4 +0.6 +0.4
stress Betaine (C)(N); with MOPS; with chloride +0.7 +0.2 +0.2 +0.3 +0.6
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