Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11385 and PFLU_RS11390 overlap by 19 nucleotidesPFLU_RS11390 and PFLU_RS11395 overlap by 4 nucleotidesPFLU_RS11395 and PFLU_RS31560 are separated by 151 nucleotidesPFLU_RS31560 and PFLU_RS11400 are separated by 86 nucleotides PFLU_RS11385: PFLU_RS11385 - FAD-dependent oxidoreductase, at 2,525,038 to 2,526,279 _RS11385 PFLU_RS11390: PFLU_RS11390 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 2,526,261 to 2,527,166 _RS11390 PFLU_RS11395: PFLU_RS11395 - formyltetrahydrofolate deformylase, at 2,527,163 to 2,528,029 _RS11395 PFLU_RS31560: PFLU_RS31560 - hypothetical protein, at 2,528,181 to 2,528,363 _RS31560 PFLU_RS11400: PFLU_RS11400 - helix-turn-helix domain-containing protein, at 2,528,450 to 2,529,049 _RS11400
Group Condition PFLU_RS11385 PFLU_RS11390 PFLU_RS11395 PFLU_RS31560 PFLU_RS11400
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -1.1 -0.9 -0.6 N.D. -0.5
stress Betaine (C)(N); with MOPS; with chloride -0.2 +0.1 +0.1 N.D. -2.4
carbon source Inosine (C) -0.4 -0.3 -0.7 N.D. -0.6
carbon source L-Lysine (C) -0.7 -0.4 -0.7 N.D. -0.1
carbon source acetate 30 mM (C) -0.6 -0.2 +0.1 N.D. -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 -0.1 +0.1 N.D. -0.7
stress Betaine (C)(N); with MOPS; with chloride -0.5 +0.1 -0.6 N.D. -0.5
stress Betaine (C)(N); with MOPS; with chloride -0.5 +0.3 +0.3 N.D. -1.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 -0.4 -0.2 N.D. -1.0
stress Betaine (C)(N); with MOPS; with chloride +0.6 -0.9 -0.1 N.D. -1.0
no stress control Glycine betaine (C)(N); with MOPS -0.3 -0.7 +0.4 N.D. -0.7
stress Betaine (C)(N); with MOPS; with chloride -0.4 -0.4 +0.2 N.D. -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 -1.3 +0.5 N.D. -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 -0.7 +0.4 N.D. -0.9
carbon source Xanthosine (C) -0.9 -0.6 +0.2 N.D. +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.6 +0.5 N.D. -0.9
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride -0.8 -0.5 +0.2 N.D. +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 -0.9 +0.1 N.D. -0.5
stress Betaine (C)(N); with MOPS; with chloride +0.3 -0.4 +0.1 N.D. -1.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.8 -0.9 -0.1 N.D. -0.7
no stress control Glycine betaine (C)(N); with MOPS +0.2 -0.6 +0.2 N.D. -0.6
no stress control Glycine betaine (C)(N); with TAPS -0.5 +0.4 +0.1 N.D. -0.7
carbon source 4-Aminobutyric (C) -0.8 +0.6 -0.0 N.D. -0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.4 +0.4 +0.1 N.D. -0.7
carbon source L-Valine (C) -0.8 +0.3 +0.5 N.D. +0.1
stress Betaine (C)(N); with TAPS; with chloride +0.5 +0.5 +0.1 N.D. -0.9
carbon source Phloretic Acid 2 mM (C) +0.5 +0.6 -0.6 N.D. -0.1
carbon source Phloretic Acid 2 mM (C) +0.6 +0.5 -0.2 N.D. -0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.2 +0.9 -0.1 N.D. -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.1 +0.1 -0.0 N.D. -0.5
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