Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11365 and PFLU_RS11370 overlap by 13 nucleotidesPFLU_RS11370 and PFLU_RS11375 are separated by 3 nucleotidesPFLU_RS11375 and PFLU_RS11380 overlap by 4 nucleotidesPFLU_RS11380 and PFLU_RS11385 are separated by 13 nucleotides PFLU_RS11365: PFLU_RS11365 - allantoin permease, at 2,519,867 to 2,521,273 _RS11365 PFLU_RS11370: PFLU_RS11370 - sarcosine oxidase, at 2,521,261 to 2,521,827 _RS11370 PFLU_RS11375: PFLU_RS11375 - FAD-dependent oxidoreductase, at 2,521,831 to 2,524,728 _RS11375 PFLU_RS11380: PFLU_RS11380 - sarcosine oxidase subunit delta, at 2,524,725 to 2,525,024 _RS11380 PFLU_RS11385: PFLU_RS11385 - FAD-dependent oxidoreductase, at 2,525,038 to 2,526,279 _RS11385
Group Condition PFLU_RS11365 PFLU_RS11370 PFLU_RS11375 PFLU_RS11380 PFLU_RS11385
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 +0.6 -0.2 -5.5 -0.1
carbon source D-Glucose (C) -0.1 -0.2 +0.1 -4.5 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.0 -0.7 +0.2 -3.9 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -0.2 +0.0 -3.9 -0.1
carbon source L-Isoleucine (C) +0.1 -0.5 -0.3 -3.2 -0.3
carbon source 4-Aminobutyric (C) +0.2 +0.5 -0.0 -3.9 -0.8
temperature Growth at 30C +0.1 -0.7 -0.1 -3.8 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 -0.1 -0.2 -3.7 +0.0
carbon source D-Mannitol (C) +0.2 +0.0 +0.2 -4.3 -0.0
carbon source L-Lysine (C) +0.4 +0.1 +0.3 -4.0 -0.7
carbon source propionate (C) +0.1 -0.6 +0.0 -2.9 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.6 +0.1 -3.8 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 +0.2 -0.0 -3.6 -0.1
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.3 -0.1 -0.3 -3.1 +0.2
carbon source D-Mannitol (C) +0.1 -0.6 +0.1 -3.0 -0.1
stress L-Glutamine (C)(N); with MOPS; with chloride +0.4 +0.1 +0.1 -3.6 -0.4
carbon source D-Xylose (C) +0.2 -0.3 +0.3 -3.3 -0.3
carbon source m-Inositol (C) +0.0 +0.0 +0.1 -3.3 -0.1
nitrogen source Ammonium chloride (N); with MOPS -0.1 -0.6 -0.4 -2.5 +0.4
no stress control L-Glutamine (C)(N); with MOPS +0.1 +0.3 +0.3 -3.8 -0.3
carbon source 4-Hydroxybenzoic Acid 2 mM (C) +0.3 -1.1 -0.3 -1.6 -0.4
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.1 +0.4 +0.3 -3.1 -0.2
carbon source Ferulic Acid 2 mM (C) +0.1 -0.2 -0.1 -2.8 +0.4
stress Betaine (C)(N); with MOPS; with chloride -0.1 +0.3 -0.2 -3.1 +0.6
stress L-Glutamine (C)(N); with MOPS; with chloride +0.4 +0.1 +0.1 -2.9 -0.2
stress L-Glutamine (C)(N); with TAPS; with chloride -0.1 +0.4 +0.2 -2.9 +0.1
carbon source Inosine 10 mM (C) +0.3 +0.4 +0.2 -3.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 +0.7 +0.2 -2.2 -0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.6 +0.7 +0.3 +1.9 +0.2
carbon source L-Valine 10 mM (C) -0.1 +0.9 +0.2 +2.2 +0.2
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