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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS11210 and PFLU_RS11215 are separated by 11 nucleotides
PFLU_RS11215 and PFLU_RS11220 are separated by 200 nucleotides
PFLU_RS11220 and PFLU_RS11225 are separated by 91 nucleotides
PFLU_RS11225 and PFLU_RS11230 are separated by 40 nucleotides
PFLU_RS11210: PFLU_RS11210 - ABC transporter ATP-binding protein, at 2,478,767 to 2,479,606
_RS11210
PFLU_RS11215: PFLU_RS11215 - ABC transporter ATP-binding protein, at 2,479,618 to 2,480,394
_RS11215
PFLU_RS11220: PFLU_RS11220 - 5-dehydro-4-deoxyglucarate dehydratase, at 2,480,595 to 2,481,506
_RS11220
PFLU_RS11225: PFLU_RS11225 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 2,481,598 to 2,481,966
_RS11225
PFLU_RS11230: PFLU_RS11230 - glycoside hydrolase family 28 protein, at 2,482,007 to 2,483,809
_RS11230
Group
Condition
PFLU
_RS11210
PFLU
_RS11215
PFLU
_RS11220
PFLU
_RS11225
PFLU
_RS11230
carbon source
propionate 20 mM (C)
+0.2
-2.8
-0.2
-0.4
-0.1
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
-1.2
-1.3
-0.5
+0.3
-0.3
carbon source
L-Lysine (C)
+0.3
-1.5
-0.2
-1.3
+0.0
soil
Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
-1.3
-0.5
-0.2
-0.5
-0.1
carbon source
acetate 30 mM (C)
-0.4
-0.4
-0.8
-0.7
-0.3
carbon source
D-(+)-Galactosamine 10 mM (C)
-1.2
-0.4
+0.1
-0.8
+0.2
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-1.9
+0.4
+0.3
-0.3
-0.5
pH
Growth at pH7 and (C) D-Glucose
+0.8
-0.1
-0.1
-2.5
+0.2
carbon source
NAG (C)
-0.4
-1.3
+0.4
-0.5
+0.2
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-1.8
+0.4
-0.2
+0.1
+0.2
carbon source
4-Acetoxy-3-methoxycinnamic 2 mM (C)
+0.3
+0.1
+0.1
-2.1
+0.1
carbon source
L-Isoleucine (C)
+0.6
+0.1
-0.9
-0.8
-0.2
carbon and nitrogen source
NAG carbon and (N)
+0.3
-0.6
+0.4
-1.4
+0.1
carbon source
Quinic Acid (C)
+0.7
+0.4
-0.5
-1.5
-0.2
carbon source
L-Valine 10 mM (C)
+0.6
-0.3
+0.3
-2.0
+0.3
stress
L-Glutamine (C)(N); with MOPS; with chloride
-1.2
-0.1
+0.4
-0.5
+0.3
carbon source
p-Coumaric 2 mM (C)
+0.6
+0.4
+0.1
-2.0
+0.3
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
+0.1
-1.6
+0.6
+0.8
-0.4
carbon source
Choline chloride 10 mM (C)
+0.7
+0.3
-0.5
-1.2
+0.2
stress
Betaine (C)(N); with MOPS; with chloride
-0.9
+0.8
+0.4
-0.5
-0.2
carbon source
4-Guanidinobutyric (C)
-0.6
+1.0
-1.0
+0.4
-0.1
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
-0.2
-0.7
-0.6
+0.9
+0.4
no stress control
L-Glutamine (C)(N); with TAPS
+0.5
-1.1
-0.4
+0.5
+0.2
no stress control
Glycine betaine (C)(N); with TAPS
+0.2
+0.8
+0.2
-1.5
+0.5
no stress control
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.8
-0.0
+0.6
-1.4
+0.2
stress
Betaine (C)(N); with TAPS; with chloride
+0.7
-1.1
+0.4
+0.7
-0.2
stress
Betaine (C)(N); with MOPS; with chloride
+0.6
+1.2
+0.1
-0.8
+0.0
carbon source
p-Coumaric (C) 5 mM
-0.3
+0.9
-0.3
+1.0
-0.0
carbon source
p-Coumaric (C)
+0.5
+0.9
-0.5
+0.7
-0.1
carbon source
Xanthosine (C)
+0.4
+0.7
-0.1
+1.2
-0.2
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