Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11210 and PFLU_RS11215 are separated by 11 nucleotidesPFLU_RS11215 and PFLU_RS11220 are separated by 200 nucleotidesPFLU_RS11220 and PFLU_RS11225 are separated by 91 nucleotidesPFLU_RS11225 and PFLU_RS11230 are separated by 40 nucleotides PFLU_RS11210: PFLU_RS11210 - ABC transporter ATP-binding protein, at 2,478,767 to 2,479,606 _RS11210 PFLU_RS11215: PFLU_RS11215 - ABC transporter ATP-binding protein, at 2,479,618 to 2,480,394 _RS11215 PFLU_RS11220: PFLU_RS11220 - 5-dehydro-4-deoxyglucarate dehydratase, at 2,480,595 to 2,481,506 _RS11220 PFLU_RS11225: PFLU_RS11225 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 2,481,598 to 2,481,966 _RS11225 PFLU_RS11230: PFLU_RS11230 - glycoside hydrolase family 28 protein, at 2,482,007 to 2,483,809 _RS11230
Group Condition PFLU_RS11210 PFLU_RS11215 PFLU_RS11220 PFLU_RS11225 PFLU_RS11230
carbon source propionate 20 mM (C) +0.2 -2.8 -0.2 -0.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.2 -1.3 -0.5 +0.3 -0.3
carbon source L-Lysine (C) +0.3 -1.5 -0.2 -1.3 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.3 -0.5 -0.2 -0.5 -0.1
carbon source acetate 30 mM (C) -0.4 -0.4 -0.8 -0.7 -0.3
carbon source D-(+)-Galactosamine 10 mM (C) -1.2 -0.4 +0.1 -0.8 +0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.9 +0.4 +0.3 -0.3 -0.5
pH Growth at pH7 and (C) D-Glucose +0.8 -0.1 -0.1 -2.5 +0.2
carbon source NAG (C) -0.4 -1.3 +0.4 -0.5 +0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.8 +0.4 -0.2 +0.1 +0.2
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) +0.3 +0.1 +0.1 -2.1 +0.1
carbon source L-Isoleucine (C) +0.6 +0.1 -0.9 -0.8 -0.2
carbon and nitrogen source NAG carbon and (N) +0.3 -0.6 +0.4 -1.4 +0.1
carbon source Quinic Acid (C) +0.7 +0.4 -0.5 -1.5 -0.2
carbon source L-Valine 10 mM (C) +0.6 -0.3 +0.3 -2.0 +0.3
stress L-Glutamine (C)(N); with MOPS; with chloride -1.2 -0.1 +0.4 -0.5 +0.3
carbon source p-Coumaric 2 mM (C) +0.6 +0.4 +0.1 -2.0 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 -1.6 +0.6 +0.8 -0.4
carbon source Choline chloride 10 mM (C) +0.7 +0.3 -0.5 -1.2 +0.2
stress Betaine (C)(N); with MOPS; with chloride -0.9 +0.8 +0.4 -0.5 -0.2
carbon source 4-Guanidinobutyric (C) -0.6 +1.0 -1.0 +0.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 -0.7 -0.6 +0.9 +0.4
no stress control L-Glutamine (C)(N); with TAPS +0.5 -1.1 -0.4 +0.5 +0.2
no stress control Glycine betaine (C)(N); with TAPS +0.2 +0.8 +0.2 -1.5 +0.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.8 -0.0 +0.6 -1.4 +0.2
stress Betaine (C)(N); with TAPS; with chloride +0.7 -1.1 +0.4 +0.7 -0.2
stress Betaine (C)(N); with MOPS; with chloride +0.6 +1.2 +0.1 -0.8 +0.0
carbon source p-Coumaric (C) 5 mM -0.3 +0.9 -0.3 +1.0 -0.0
carbon source p-Coumaric (C) +0.5 +0.9 -0.5 +0.7 -0.1
carbon source Xanthosine (C) +0.4 +0.7 -0.1 +1.2 -0.2
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