Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11195 and PFLU_RS11200 are separated by 45 nucleotidesPFLU_RS11200 and PFLU_RS11205 are separated by 50 nucleotidesPFLU_RS11205 and PFLU_RS11210 are separated by 13 nucleotidesPFLU_RS11210 and PFLU_RS11215 are separated by 11 nucleotides PFLU_RS11195: PFLU_RS11195 - ABC transporter permease, at 2,475,092 to 2,476,129 _RS11195 PFLU_RS11200: PFLU_RS11200 - ABC transporter substrate-binding protein, at 2,476,175 to 2,477,785 _RS11200 PFLU_RS11205: PFLU_RS11205 - ABC transporter permease, at 2,477,836 to 2,478,753 _RS11205 PFLU_RS11210: PFLU_RS11210 - ABC transporter ATP-binding protein, at 2,478,767 to 2,479,606 _RS11210 PFLU_RS11215: PFLU_RS11215 - ABC transporter ATP-binding protein, at 2,479,618 to 2,480,394 _RS11215
Group Condition PFLU_RS11195 PFLU_RS11200 PFLU_RS11205 PFLU_RS11210 PFLU_RS11215
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.0 +0.1 -0.5 -1.2 -1.3
carbon source L-Lysine (C) +0.0 -0.5 -1.1 +0.3 -1.5
carbon source NAG (C) -0.2 -0.2 -0.3 -0.4 -1.3
stress L-Glutamine (C)(N); with MOPS; with chloride -0.2 -0.6 -0.2 -1.2 -0.1
no stress control Glycine betaine (C)(N); with MOPS +0.1 -0.5 -0.8 -0.6 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 -0.1 +0.1 +0.1 -1.6
carbon source propionate 20 mM (C) +0.1 +0.1 +0.1 +0.2 -2.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.3 -0.3 -0.6 +0.3 -0.4
temperature shift Temperature shift 10_to_25; with MOPS +0.2 -0.3 -0.5 -0.6 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.3 +0.2 -1.2 -0.4 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 +0.1 -1.5 -0.4 +0.4
carbon source D-Glucuronic (C) +0.0 -0.2 +0.3 -1.0 -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 -0.2 +0.3 -1.3 -0.5
carbon source D-(+)-Galactosamine 10 mM (C) +0.2 +0.2 -0.4 -1.2 -0.4
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.2 -0.9 +0.4 -0.8 -0.5
no stress control L-Glutamine (C)(N); with TAPS -0.4 +0.1 -0.6 +0.5 -1.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 +0.2 -0.3 -1.9 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +0.1 -0.2 -1.8 +0.4
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.4 -0.2 +0.6 -0.5 -0.9
no stress control Growth with no stress; with MOPS +0.3 -0.2 +0.2 -0.0 -1.6
carbon source L-Carnitine (C) +0.3 +0.0 -0.4 -1.3 +0.4
carbon source Phloretic Acid 2 mM (C) -0.2 -0.2 -1.5 +0.1 +0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 -0.6 +0.8 -0.2 -0.7
temperature Growth at 25C; with MOPS +0.2 +0.4 +0.2 -0.9 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.5 -0.9 +0.3 -0.5 +0.2
stress Betaine (C)(N); with TAPS; with chloride +0.2 +0.2 -0.3 +0.7 -1.1
carbon source Xanthosine (C) +0.0 -0.4 -0.8 +0.4 +0.7
carbon source 4-Guanidinobutyric (C) +0.0 +0.3 -0.7 -0.6 +1.0
pH Growth at pH9 and (C) Trisodium citrate +0.5 +0.1 +0.1 +0.9 -1.0
stress Betaine (C)(N); with MOPS; with chloride +0.4 -0.6 -0.7 +0.6 +1.2
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