Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11160 and PFLU_RS11165 overlap by 1 nucleotidesPFLU_RS11165 and PFLU_RS11170 are separated by 584 nucleotidesPFLU_RS11170 and PFLU_RS11175 overlap by 46 nucleotidesPFLU_RS11175 and PFLU_RS11180 are separated by 72 nucleotides PFLU_RS11160: PFLU_RS11160 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 2,466,243 to 2,468,474 _RS11160 PFLU_RS11165: PFLU_RS11165 - (2Fe-2S)-binding protein, at 2,468,474 to 2,468,929 _RS11165 PFLU_RS11170: PFLU_RS11170 - FadR family transcriptional regulator, at 2,469,514 to 2,470,299 _RS11170 PFLU_RS11175: PFLU_RS11175 - NAD(P)-dependent oxidoreductase, at 2,470,254 to 2,471,069 _RS11175 PFLU_RS11180: PFLU_RS11180 - porin, at 2,471,142 to 2,471,867 _RS11180
Group Condition PFLU_RS11160 PFLU_RS11165 PFLU_RS11170 PFLU_RS11175 PFLU_RS11180
stress Betaine (C)(N); with TAPS; with chloride +0.2 -0.5 +0.0 -2.2 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 +0.0 -0.7 -1.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.0 -1.0 -0.2 -0.5 -0.3
carbon source L-Valine (C) -0.6 -0.9 -0.5 +0.3 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 +0.0 +0.1 -1.5 -0.1
pH Growth at pH9 and (C) Trisodium citrate -0.2 -0.7 -0.3 -0.7 +0.2
carbon source acetate 30 mM (C) -0.3 -0.5 -0.4 -0.5 -0.0
carbon source D,L-Malic Acid (C) -0.5 +0.3 -0.8 -0.8 +0.1
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.2 -0.4 -0.7 -0.4 +0.2
stress Betaine (C)(N); with TAPS; with chloride +0.2 -0.5 +0.0 -1.1 +0.0
stress Betaine (C)(N); with MOPS; with chloride +0.0 -0.3 -0.5 -0.6 +0.2
carbon source L-Carnitine (C) +0.2 +0.3 -0.2 -1.4 -0.1
carbon source Phloretic Acid 2 mM (C) -0.2 +0.4 +0.2 -1.6 +0.1
nitrogen source NAG (N); with MOPS -0.3 -0.2 +0.3 -1.0 +0.1
carbon source Inosine (C) -0.3 +0.0 -0.6 -1.0 +0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.0 +0.2 +0.3 -1.0 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 -0.5 -0.8 +0.7 -0.4
carbon source caffeic 2 mM (C) -0.1 +0.8 -0.3 -1.1 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 +0.7 -0.5 -0.7 -0.3
carbon source 4-Aminobutyric (C) -0.0 +0.3 +0.0 -1.2 +0.2
stress Betaine (C)(N); with MOPS; with chloride +0.3 +0.1 -0.1 -1.1 +0.2
carbon source Xanthosine (C) -0.2 +0.6 +0.2 -0.9 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 -0.6 +0.1 +0.3 +0.4
carbon source D-Glucuronic (C) +0.1 -0.8 +0.2 +0.5 -0.2
stress Betaine (C)(N); with MOPS; with chloride +0.2 +0.6 -0.1 -0.7 -0.1
pH Growth at pH8 and (C) Trisodium citrate -0.5 +0.3 -0.6 +0.4 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.4 -0.1 +0.5 -0.6
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.7 +0.2 +1.3 -0.1
carbon source L-Valine 10 mM (C) -0.2 +0.5 +0.3 +0.4 +0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +0.7 +0.6 +0.7 +0.2
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