Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11130 and PFLU_RS11135 are separated by 457 nucleotidesPFLU_RS11135 and PFLU_RS11140 are separated by 24 nucleotidesPFLU_RS11140 and PFLU_RS11145 are separated by 27 nucleotidesPFLU_RS11145 and PFLU_RS11150 overlap by 1 nucleotides PFLU_RS11130: PFLU_RS11130 - GlxA family transcriptional regulator, at 2,455,386 to 2,456,462 _RS11130 PFLU_RS11135: PFLU_RS11135 - substrate-binding domain-containing protein, at 2,456,920 to 2,458,005 _RS11135 PFLU_RS11140: PFLU_RS11140 - response regulator, at 2,458,030 to 2,461,761 _RS11140 PFLU_RS11145: PFLU_RS11145 - exported rhamnogalacturonase, at 2,461,789 to 2,463,372 _RS11145 PFLU_RS11150: PFLU_RS11150 - pectin lyase, at 2,463,372 to 2,464,625 _RS11150
Group Condition PFLU_RS11130 PFLU_RS11135 PFLU_RS11140 PFLU_RS11145 PFLU_RS11150
stress Betaine (C)(N); with TAPS; with chloride -0.4 -1.4 -0.6 +0.5 -0.3
stress Betaine (C)(N); with MOPS; with chloride -0.5 -0.5 +0.0 -0.5 -0.4
carbon and nitrogen source NAG carbon and (N) -0.4 -0.2 +0.1 -0.4 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.2 -0.1 +0.2 -1.5
carbon source 4-Aminobutyric (C) -0.0 +0.2 -0.2 -0.0 -1.3
pH Growth at pH6 and (C) D-Glucose -0.4 -0.6 +0.0 +0.1 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.8 -0.3 +0.3 +0.2
carbon source L-Valine (C) +0.0 -0.3 +0.4 -0.1 -1.1
carbon source Shikimic Acid (C) -0.3 +0.7 -0.6 -0.0 -0.6
carbon source Xanthosine (C) +0.2 -0.3 +0.2 +0.1 -0.9
carbon source D,L-Malic Acid (C) +0.2 -0.7 +0.2 -0.1 -0.3
carbon source sn-glycero-3-phosphocholine (C) +0.6 -0.4 -0.0 -0.3 -0.4
stress Betaine (C)(N); with MOPS; with chloride +0.6 -0.5 -0.0 +0.2 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.0 -0.5 +0.4 +0.3 -0.6
carbon source Inosine (C) +0.3 +0.5 +0.1 -0.2 -1.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.7 +0.1 -0.3 +0.1 +0.5
carbon source Phloretic Acid 2 mM (C) -0.4 +0.6 +0.3 -0.2 -0.5
pH Growth at pH9 and (C) Trisodium citrate -0.0 -1.1 -0.2 +0.5 +0.6
stress Glucose (C) and Betaine (N); with TAPS; with chloride +0.3 +0.3 +0.2 -0.1 -0.7
carbon source m-Inositol (C) +0.2 +0.2 +0.7 -0.1 -1.0
carbon and nitrogen source NAG carbon and (N) -0.5 +0.6 +0.2 -0.3 +0.0
carbon source L-Carnitine (C) +0.4 +0.6 +0.3 -0.5 -0.6
stress Betaine (C)(N); with MOPS; with chloride +0.4 +0.4 +0.2 +0.1 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -0.9 +0.1 +0.5 +0.7
carbon source acetate (C) +0.3 +0.6 -0.2 +0.1 -0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.5 +0.6 +0.2 -0.2 +0.4
carbon source m-Inositol (C) -0.1 -0.5 +0.4 +0.2 +0.7
carbon source L-Isoleucine (C) -0.2 +0.9 +0.0 +0.3 -0.3
carbon source propionate (C) -0.1 +0.6 +0.4 +0.4 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 -0.5 +0.1 +0.3 +0.8
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