Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS11085 and PFLU_RS11090 are separated by 19 nucleotidesPFLU_RS11090 and PFLU_RS11095 are separated by 155 nucleotidesPFLU_RS11095 and PFLU_RS11100 are separated by 3 nucleotidesPFLU_RS11100 and PFLU_RS31545 are separated by 276 nucleotides PFLU_RS11085: PFLU_RS11085 - hypothetical protein, at 2,445,929 to 2,446,327 _RS11085 PFLU_RS11090: PFLU_RS11090 - SDR family NAD(P)-dependent oxidoreductase, at 2,446,347 to 2,447,108 _RS11090 PFLU_RS11095: PFLU_RS11095 - GlxA family transcriptional regulator, at 2,447,264 to 2,448,247 _RS11095 PFLU_RS11100: PFLU_RS11100 - integrase, at 2,448,251 to 2,448,648 _RS11100 PFLU_RS31545: PFLU_RS31545 - LysR family transcriptional regulator, at 2,448,925 to 2,449,044 _RS31545
Group Condition PFLU_RS11085 PFLU_RS11090 PFLU_RS11095 PFLU_RS11100 PFLU_RS31545
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.0 -0.3 -1.0 -1.9 -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -0.2 -0.7 +0.4 -4.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 +0.1 -0.1 -1.7 -2.9
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.2 -0.4 +0.1 -0.6 -3.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 -0.1 +0.4 -0.3 -4.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 -0.1 -0.6 -1.6 -1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 -0.7 -0.0 -0.6 -1.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -0.5 -0.0 +0.9 -2.9
carbon source D-Glucosamine Hydrochloride 10 mM (C) -0.3 +0.1 -0.2 -0.5 -1.8
carbon source Shikimic Acid (C) -0.0 +0.1 +0.6 -2.0 -0.8
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.0 -0.2 -0.3 -2.1 +0.6
carbon source m-Inositol (C) +0.2 -0.8 -0.2 -1.4 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.7 -0.4 -0.1 -1.2 -0.9
stress L-Glutamine (C)(N); with TAPS; with chloride +0.2 +0.3 +0.1 -0.9 -1.6
no stress control Glycine betaine (C)(N); with MOPS +0.0 +0.0 +0.2 +0.4 -2.4
carbon source L-Valine (C) +0.5 +0.4 -0.1 +0.0 -1.9
no stress control L-Glutamine (C)(N); with TAPS +0.2 -0.8 +0.1 -1.0 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 +0.9 -0.1 -0.4 -1.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 -0.2 +0.2 +0.5 -1.6
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.1 -0.6 -0.3 -0.7 +1.1
carbon source p-Coumaric (C) 5 mM -0.2 +0.6 +0.3 +0.4 -1.4
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.3 -0.2 -0.7 -0.3 +1.3
temperature Growth at 30C -0.0 -0.3 -0.2 -0.7 +1.4
pH Growth at pH6 and (C) D-Glucose -0.3 +0.1 -0.4 -0.5 +1.3
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.2 -0.4 -0.7 +0.1 +1.4
carbon source acetate 30 mM (C) -0.4 +0.2 +0.6 -0.9 +0.8
pH Growth at pH8 and (C) D-Glucose -0.2 +0.1 +0.2 -1.0 +1.5
carbon source Quinic Acid (C) -0.2 +0.7 -0.5 -0.5 +1.3
temperature Growth at 25C -0.3 +0.1 +0.4 -0.5 +1.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.4 -0.2 -0.1 +1.3 +1.3
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