Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS10905 and PFLU_RS10910 are separated by 103 nucleotidesPFLU_RS10910 and PFLU_RS10915 are separated by 317 nucleotidesPFLU_RS10915 and PFLU_RS10920 overlap by 4 nucleotidesPFLU_RS10920 and PFLU_RS10925 overlap by 1 nucleotides PFLU_RS10905: PFLU_RS10905 - P1 family peptidase, at 2,404,840 to 2,405,832 _RS10905 PFLU_RS10910: PFLU_RS10910 - tetratricopeptide repeat protein, at 2,405,936 to 2,407,276 _RS10910 PFLU_RS10915: PFLU_RS10915 - ABC transporter substrate-binding protein, at 2,407,594 to 2,409,177 _RS10915 PFLU_RS10920: PFLU_RS10920 - ABC transporter permease, at 2,409,174 to 2,410,151 _RS10920 PFLU_RS10925: PFLU_RS10925 - ABC transporter permease, at 2,410,151 to 2,410,978 _RS10925
Group Condition PFLU_RS10905 PFLU_RS10910 PFLU_RS10915 PFLU_RS10920 PFLU_RS10925
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.4 -0.9 -0.6 -0.0 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -0.8 +0.1 +0.0 -0.2
carbon source m-Inositol (C) -0.3 -0.1 -0.1 -0.1 -1.1
temperature shift Temperature shift 30_to_25; with MOPS -0.8 -0.2 -0.3 -0.1 -0.2
pH Growth at pH8 and (C) D-Glucose -0.7 -0.2 -0.1 +0.1 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.9 -0.0 +0.2 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -0.7 -0.4 +0.1 +0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 -0.1 +0.2 +0.1 -1.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.6 -0.3 -0.4 -0.3 +0.6
carbon source Phloretic Acid 2 mM (C) -1.3 +0.1 -0.3 +0.1 +0.4
carbon source L-Ornithine (C) -0.6 -0.2 +0.1 +0.2 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.7 +0.2 -0.3 +0.3 -0.4
carbon source Xanthosine (C) +0.3 -0.9 -0.3 +0.3 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.4 +0.4 -0.1 +0.1 -0.6
carbon source L-Isoleucine (C) -0.5 +0.4 -0.3 +0.1 -0.1
stress L-Glutamine (C)(N); with TAPS; with chloride +0.8 -0.1 +0.0 -0.0 -1.0
stress Betaine (C)(N); with MOPS; with chloride -0.6 +0.5 -0.1 -0.3 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.0 -0.7 +0.3 +0.0 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 +0.1 +0.2 +0.3 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.9 -0.1 +0.2 +0.2 +0.7
stress Betaine (C)(N); with TAPS; with chloride -0.7 +0.4 -0.3 +0.6 +0.2
pH Growth at pH9 and (C) Trisodium citrate +0.5 -0.4 -0.1 -0.2 +0.5
stress Betaine (C)(N); with TAPS; with chloride +0.5 -0.1 +0.3 -0.5 +0.3
carbon source L-Carnitine (C) -0.3 +0.7 -0.3 -0.1 +0.6
carbon source D-Glucosamine Hydrochloride 10 mM (C) +0.3 +0.6 +0.1 +0.2 -0.5
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.2 +0.3 +0.4 -0.2 +0.3
carbon source Xanthosine (C) +0.7 +0.5 -0.1 +0.1 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 -0.2 +0.2 +0.2 +0.7
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.6 +0.2 -0.2 +0.2 +0.5
pH Growth at pH7 and (C) D-Glucose +0.4 +0.4 +0.1 -0.0 +1.0
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