Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS10600 and PFLU_RS10605 are separated by 8 nucleotidesPFLU_RS10605 and PFLU_RS10610 are separated by 131 nucleotidesPFLU_RS10610 and PFLU_RS10615 are separated by 167 nucleotidesPFLU_RS10615 and PFLU_RS10620 are separated by 139 nucleotides PFLU_RS10600: PFLU_RS10600 - NAD-dependent protein deacetylase, at 2,334,518 to 2,335,363 _RS10600 PFLU_RS10605: PFLU_RS10605 - CBS domain-containing protein, at 2,335,372 to 2,335,812 _RS10605 PFLU_RS10610: PFLU_RS10610 - DNA topoisomerase III, at 2,335,944 to 2,337,893 _RS10610 PFLU_RS10615: PFLU_RS10615 - DDE-type integrase/transposase/recombinase, at 2,338,061 to 2,339,209 _RS10615 PFLU_RS10620: PFLU_RS10620 - MHS family MFS transporter, at 2,339,349 to 2,340,971 _RS10620
Group Condition PFLU_RS10600 PFLU_RS10605 PFLU_RS10610 PFLU_RS10615 PFLU_RS10620
no stress control Glycine betaine (C)(N); with MOPS -0.1 -2.5 +0.1 N.D. -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.2 -1.4 +0.3 N.D. -0.3
no stress control Glycine betaine (C)(N); with MOPS -0.2 -2.3 +0.2 N.D. -0.1
no stress control Glycine betaine (C)(N); with MOPS -0.6 -1.2 -0.3 N.D. -0.2
no stress control Glycine betaine (C)(N); with TAPS +0.4 -2.8 +0.1 N.D. -0.1
no stress control Glycine betaine (C)(N); with TAPS -0.1 -1.9 +0.0 N.D. -0.2
temperature Growth at 25C -0.7 -0.7 -0.5 N.D. -0.3
stress Betaine (C)(N); with MOPS; with chloride -0.5 -1.5 -0.3 N.D. +0.2
stress Betaine (C)(N); with MOPS; with chloride -0.2 -1.2 -0.4 N.D. -0.2
stress Betaine (C)(N); with MOPS; with chloride +0.0 -1.9 -0.1 N.D. +0.0
no stress control Glycine betaine (C)(N); with TAPS -0.0 -1.9 +0.1 N.D. -0.1
no stress control Glycine betaine (C)(N); with MOPS -0.1 -1.6 +0.2 N.D. -0.3
no stress control Betaine (C)(N); with MOPS -0.6 -1.2 +0.1 N.D. +0.0
no stress control Betaine (C)(N); with MOPS -0.3 -1.4 +0.0 N.D. +0.1
stress Betaine (C)(N); with MOPS; with chloride -0.6 -1.2 +0.2 N.D. +0.2
no stress control Betaine (C)(N); with TAPS -0.3 -1.3 +0.2 N.D. -0.0
pH Growth at pH8 and (C) Trisodium citrate -0.5 -1.0 -0.2 N.D. +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 -1.1 -0.2 N.D. +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -1.0 +0.2 N.D. +0.1
carbon source Betaine 10 mM (C) -0.2 -1.3 +0.1 N.D. +0.3
stress Betaine (C)(N); with TAPS; with chloride -0.5 -1.0 +0.3 N.D. +0.2
carbon source Choline chloride (C) +0.3 -1.1 +0.1 N.D. -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 -0.6 +0.3 N.D. +0.2
carbon source Betaine 10 mM (C) +0.1 -1.2 +0.1 N.D. +0.3
stress Betaine (C)(N); with TAPS; with chloride -1.0 +0.2 +0.4 N.D. +0.1
pH Growth at pH9 and (C) Trisodium citrate -0.9 +0.6 +0.0 N.D. +0.3
carbon source p-Coumaric 2 mM (C) -0.6 +0.8 -0.1 N.D. +0.4
pH Growth at pH7 and (C) D-Glucose -0.6 +0.5 +0.3 N.D. +0.4
carbon source 4-Aminobutyric (C) +0.5 +0.8 +0.3 N.D. -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 +0.9 +0.4 N.D. -0.0
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