Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS10550 and PFLU_RS10555 are separated by 3 nucleotidesPFLU_RS10555 and PFLU_RS10560 are separated by 116 nucleotidesPFLU_RS10560 and PFLU_RS10565 are separated by 99 nucleotidesPFLU_RS10565 and PFLU_RS10570 are separated by 125 nucleotides PFLU_RS10550: PFLU_RS10550 - glutathione S-transferase, at 2,324,881 to 2,325,579 _RS10550 PFLU_RS10555: PFLU_RS10555 - PhzF family phenazine biosynthesis protein, at 2,325,583 to 2,326,425 _RS10555 PFLU_RS10560: PFLU_RS10560 - porphobilinogen synthase, at 2,326,542 to 2,327,516 _RS10560 PFLU_RS10565: PFLU_RS10565 - DUF1615 domain-containing protein, at 2,327,616 to 2,328,701 _RS10565 PFLU_RS10570: PFLU_RS10570 - DUF4349 domain-containing protein, at 2,328,827 to 2,329,681 _RS10570
Group Condition PFLU_RS10550 PFLU_RS10555 PFLU_RS10560 PFLU_RS10565 PFLU_RS10570
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.5 -1.4 -0.6 -0.0 +0.1
carbon source L-Valine (C) +0.4 -2.3 -0.1 -0.3 -0.6
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.1 -1.7 -0.6 -0.1 -0.3
stress Betaine (C)(N); with TAPS; with chloride -1.1 -0.6 -1.0 +0.1 -0.1
carbon source D,L-Malic Acid (C) -1.3 -0.6 -0.8 +0.3 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9 -1.2 +0.0 -0.2 -0.3
carbon source Xanthosine (C) -1.5 +0.0 -0.4 +0.1 -0.6
pH Growth at pH7 and (C) D-Glucose -0.6 -0.8 -0.5 -0.0 -0.3
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -1.3 -0.7 +0.1 +0.0 +0.1
carbon source Xanthosine (C) -0.6 -1.2 +0.1 +0.0 +0.1
carbon source L-Carnitine (C) -0.0 -2.0 +0.6 -0.1 -0.0
carbon source L-Carnitine (C) +0.2 -1.5 -0.4 +0.1 +0.1
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.9 +0.7 -1.0 +0.1 -0.4
stress Betaine (C)(N); with MOPS; with chloride +0.4 -1.6 +0.3 +0.0 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.7 -1.2 +0.1 -0.4 -0.3
nitrogen source nitrate (N); with MOPS -0.6 -0.7 +0.5 +0.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -1.6 +0.6 -0.2 +0.0
no stress control L-Glutamine (C)(N); with MOPS +0.7 -0.4 -1.0 +0.0 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.5 -0.7 -0.8 +0.1 +0.5
carbon source Shikimic Acid (C) +0.6 +0.4 -0.5 -0.3 -0.5
carbon source L-Ornithine 10 mM (C) +0.2 +0.6 -1.1 -0.0 -0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +1.2 -0.4 -0.1 -0.8
carbon source p-Coumaric 2 mM (C) -0.7 +0.5 +0.3 +0.1 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.4 -0.4 +0.7 -0.2 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.6 -0.5 +0.8 -0.1 -0.1
carbon source L-Valine 10 mM (C) +0.2 +1.0 -0.6 +0.2 -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 +1.0 -0.7 +0.1 +0.6
carbon source NAG (C) +0.2 +0.8 +0.8 -0.3 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 +1.4 -0.3 +0.2 -0.4
carbon source Phloretic Acid 2 mM (C) +1.0 +0.4 +1.1 +0.1 +0.3
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