Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS10300 and PFLU_RS10305 overlap by 4 nucleotidesPFLU_RS10305 and PFLU_RS10310 are separated by 10 nucleotidesPFLU_RS10310 and PFLU_RS10315 overlap by 4 nucleotidesPFLU_RS10315 and PFLU_RS10320 are separated by 7 nucleotides PFLU_RS10300: PFLU_RS10300 - transaldolase, at 2,271,561 to 2,272,784 _RS10300 PFLU_RS10305: PFLU_RS10305 - sulfotransferase family protein, at 2,272,781 to 2,273,509 _RS10305 PFLU_RS10310: PFLU_RS10310 - SDR family oxidoreductase, at 2,273,520 to 2,274,245 _RS10310 PFLU_RS10315: PFLU_RS10315 - hypothetical protein, at 2,274,242 to 2,275,378 _RS10315 PFLU_RS10320: PFLU_RS10320 - class I SAM-dependent methyltransferase, at 2,275,386 to 2,276,156 _RS10320
Group Condition PFLU_RS10300 PFLU_RS10305 PFLU_RS10310 PFLU_RS10315 PFLU_RS10320
carbon source sn-glycero-3-phosphocholine 10 mM (C) -1.5 -1.2 -1.6 -0.9 -1.2
carbon source sn-glycero-3-phosphocholine 10 mM (C) -0.9 -1.1 -1.5 -0.4 -0.4
carbon source sn-glycero-3-phosphocholine 10 mM (C) -1.1 -0.9 -1.4 -0.2 -0.6
carbon source L-Ornithine 10 mM (C) -0.5 -1.5 -1.9 -0.6 +1.3
carbon source L-Ornithine 10 mM (C) -0.5 -1.3 -1.4 -0.5 +1.1
carbon source L-Ornithine (C) +0.8 -1.9 -1.5 -0.8 +1.6
carbon source L-Ornithine 10 mM (C) -0.3 -1.4 -0.6 -0.8 +1.7
carbon source L-Ornithine (C) +0.7 -0.9 -1.2 -0.2 +1.4
carbon source L-Ornithine (C) +1.3 -0.9 -1.2 -0.5 +1.6
carbon source butyrate (C) +0.7 +0.6 +0.5 +0.5 +0.8
temperature shift Temperature shift 10_to_30 +1.5 +0.5 +0.4 +0.3 +0.3
temperature shift Temperature shift 10_to_30 +1.4 +0.4 +0.3 +0.4 +0.5
carbon source butyrate (C) +0.7 +0.6 +0.5 +0.6 +0.6
carbon source D-Fructose (C) +1.2 +0.4 +0.3 +0.3 +0.9
carbon source Cytidine (C) +0.8 +0.3 +0.6 +0.6 +1.0
carbon source 4-Acetoxy-3-methoxycinnamic (C) +1.1 +0.6 +0.2 +0.6 +0.8
carbon source octanoate 10 mM (C) +1.0 +0.3 +1.0 +0.5 +0.5
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.9 +0.6 +0.4 +0.6 +0.8
temperature shift Temperature shift 10_to_30 +1.3 +0.6 +0.5 +0.3 +0.5
carbon source L-tyrosine 10 mM (C) +1.2 +0.2 +0.8 +0.3 +0.7
carbon source L-tyrosine 10 mM (C) +0.9 +0.6 +0.9 +0.5 +0.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +1.1 +0.8 +0.6 +0.3 +0.6
carbon source pyruvate (C) +1.5 +0.6 +0.4 +0.4 +0.6
carbon source pyruvate (C) +1.5 +0.7 +0.4 +0.3 +0.8
carbon source 4-Acetoxy-3-methoxycinnamic (C) +1.1 +0.6 +0.6 +0.6 +0.9
carbon source pyruvate (C) +1.6 +0.6 +0.6 +0.3 +0.8
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) +1.1 +1.2 +0.8 +0.4 +0.7
carbon source Choline chloride 10 mM (C) +1.1 +1.2 +1.1 +0.6 +0.5
carbon source Cytidine (C) +1.5 +0.5 +0.7 +0.7 +1.3
carbon source Cytidine (C) +1.9 +0.8 +0.9 +1.1 +1.7
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