Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS09105 and PFLU_RS09110 are separated by 261 nucleotidesPFLU_RS09110 and PFLU_RS09115 are separated by 68 nucleotidesPFLU_RS09115 and PFLU_RS09120 are separated by 229 nucleotidesPFLU_RS09120 and PFLU_RS09125 are separated by 203 nucleotides PFLU_RS09105: PFLU_RS09105 - response regulator transcription factor, at 2,017,912 to 2,018,676 _RS09105 PFLU_RS09110: PFLU_RS09110 - orotidine-5'-phosphate decarboxylase, at 2,018,938 to 2,019,636 _RS09110 PFLU_RS09115: PFLU_RS09115 - NADP-dependent oxidoreductase, at 2,019,705 to 2,020,712 _RS09115 PFLU_RS09120: PFLU_RS09120 - SDR family oxidoreductase, at 2,020,942 to 2,021,703 _RS09120 PFLU_RS09125: PFLU_RS09125 - PLP-dependent aminotransferase family protein, at 2,021,907 to 2,023,319 _RS09125
Group Condition PFLU_RS09105 PFLU_RS09110 PFLU_RS09115 PFLU_RS09120 PFLU_RS09125
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.4 N.D. -0.2 -0.2 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.0 N.D. +0.1 -0.3 +0.0
carbon source Choline chloride 10 mM (C) -0.3 N.D. -0.1 -0.4 -0.2
carbon source L-Arabinose (C) -0.3 N.D. -0.1 -0.5 -0.1
no stress control Glycine betaine (C)(N); with MOPS -0.4 N.D. +0.1 -0.6 -0.0
carbon source acetate (C) +0.1 N.D. -0.1 -0.5 -0.3
pH Growth at pH8 and (C) Trisodium citrate +0.1 N.D. +0.2 -0.3 -0.7
carbon source Xanthosine (C) -0.0 N.D. +0.2 -1.0 +0.2
carbon source propionate (C) -0.4 N.D. +0.2 -0.4 +0.0
temperature shift Temperature shift 30_to_25; with MOPS -0.0 N.D. -0.1 -0.6 +0.3
no stress control L-Glutamine (C)(N); with MOPS -0.5 N.D. -0.2 -0.1 +0.3
nitrogen source NAG (N); with MOPS -0.2 N.D. +0.1 -0.5 +0.2
carbon source p-Coumaric 2 mM (C) +0.4 N.D. -0.1 -0.2 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 N.D. -0.1 -0.5 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 N.D. -0.2 +0.2 +0.2
nitrogen source nitrate (N); with MOPS +0.3 N.D. -0.1 -0.6 +0.1
stress L-Glutamine (C)(N); with MOPS; with chloride +0.4 N.D. +0.1 -0.6 -0.2
stress Betaine (C)(N); with MOPS; with chloride -0.7 N.D. +0.1 +0.3 +0.2
carbon source Quinic Acid (C) -0.4 N.D. -0.2 +0.5 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.0 N.D. +0.2 +0.4 -0.3
carbon source Phloretic Acid 2 mM (C) +0.7 N.D. +0.1 -0.3 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 N.D. -0.1 +0.5 +0.3
carbon source NAG (C) +0.3 N.D. +0.1 -0.5 +0.4
carbon source 4-Guanidinobutyric (C) -0.6 N.D. +0.1 +0.7 +0.1
carbon source L-Valine (C) -0.2 N.D. -0.1 +0.8 -0.1
carbon source Xanthosine (C) +0.1 N.D. +0.1 +0.5 -0.2
carbon source p-Coumaric (C) 5 mM -0.2 N.D. +0.1 +0.5 +0.2
carbon source Inosine (C) -0.1 N.D. +0.2 +0.8 +0.1
carbon source D-Glucosamine Hydrochloride 10 mM (C) +0.4 N.D. +0.2 -0.0 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.8 N.D. +0.3 +0.6 -0.0
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