Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS08905 and PFLU_RS08910 are separated by 81 nucleotidesPFLU_RS08910 and PFLU_RS08915 are separated by 332 nucleotidesPFLU_RS08915 and PFLU_RS08920 are separated by 262 nucleotidesPFLU_RS08920 and PFLU_RS08925 overlap by 4 nucleotides PFLU_RS08905: PFLU_RS08905 - hypothetical protein, at 1,973,465 to 1,973,833 _RS08905 PFLU_RS08910: PFLU_RS08910 - beta-1,6-glucan synthase, at 1,973,915 to 1,975,468 _RS08910 PFLU_RS08915: PFLU_RS08915 - glycine betaine ABC transporter substrate-binding protein, at 1,975,801 to 1,976,652 _RS08915 PFLU_RS08920: PFLU_RS08920 - DUF485 domain-containing protein, at 1,976,915 to 1,977,226 _RS08920 PFLU_RS08925: PFLU_RS08925 - cation acetate symporter, at 1,977,223 to 1,978,881 _RS08925
Group Condition PFLU_RS08905 PFLU_RS08910 PFLU_RS08915 PFLU_RS08920 PFLU_RS08925
carbon source pyruvate (C) -0.1 +0.0 +0.0 -2.3 -2.6
carbon source pyruvate (C) +0.0 -0.0 +0.1 -2.4 -2.3
carbon source pyruvate (C) +0.2 +0.1 +0.2 -2.6 -2.6
carbon source NAG (C); with MOPS -0.4 -0.2 -0.1 -1.8 -1.9
carbon and nitrogen source NAG carbon and (N) -0.9 -0.2 +0.1 -1.4 -1.6
carbon source NAG (C); with MOPS -0.6 -0.1 +0.3 -1.8 -1.7
carbon source pyruvate 20 mM (C) +0.4 -0.1 -0.0 -2.5 -1.5
carbon source NAG (C); with MOPS -0.1 -0.1 +0.1 -1.8 -1.7
carbon and nitrogen source NAG carbon and (N) -0.2 -0.4 +0.7 -1.7 -1.7
carbon source NAG (C) -0.9 -0.4 +0.3 -1.1 -1.3
carbon source NAG (C) -1.1 -0.2 +0.3 -0.8 -1.2
carbon source pyruvate 20 mM (C) +0.1 +0.2 +0.1 -1.7 -1.6
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -0.3 -0.2 +0.1 -1.3 -1.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.3 +0.4 -1.7 -0.9
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS +0.0 -0.2 -0.1 -1.2 -1.2
carbon source pyruvate 20 mM (C) +0.4 +0.2 -0.0 -1.4 -1.8
carbon and nitrogen source NAG carbon and (N); with MOPS -0.5 -0.3 +0.6 -1.4 -1.1
carbon and nitrogen source NAG carbon and (N); with MOPS -0.5 -0.1 +0.3 -1.3 -1.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.6 +0.1 +0.1 -1.3 -0.8
pH Growth at pH9 and (C) D-Glucose -1.9 -0.4 -0.0 -0.1 +0.0
carbon and nitrogen source NAG carbon and (N); with MOPS -0.2 -0.2 +0.2 -1.2 -1.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 -0.1 -0.3 -1.2 -0.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.5 -0.3 -0.4 -1.2 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.3 +0.2 -0.0 -0.6 -0.5
pH Growth at pH8 and (C) Trisodium citrate -1.5 -0.5 +0.3 -0.1 -0.1
carbon source NAG (C) -0.9 -0.0 +0.5 -0.7 -0.5
carbon source L-Ornithine 10 mM (C) +0.5 -0.7 +0.6 +0.3 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5 -0.7 +0.1 +0.6 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 -0.1 +0.1 +1.4 +0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 -0.1 +0.1 +1.4 +1.4
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