Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS08750 and PFLU_RS08755 are separated by 63 nucleotidesPFLU_RS08755 and PFLU_RS08760 are separated by 11 nucleotidesPFLU_RS08760 and PFLU_RS08765 overlap by 1 nucleotidesPFLU_RS08765 and PFLU_RS08770 overlap by 1 nucleotides PFLU_RS08750: PFLU_RS08750 - phosphonate ABC transporter, permease protein PhnE, at 1,944,397 to 1,945,179 _RS08750 PFLU_RS08755: PFLU_RS08755 - phosphonate metabolism transcriptional regulator PhnF, at 1,945,243 to 1,945,920 _RS08755 PFLU_RS08760: PFLU_RS08760 - phosphonate C-P lyase system protein PhnG, at 1,945,932 to 1,946,369 _RS08760 PFLU_RS08765: PFLU_RS08765 - phosphonate C-P lyase system protein PhnH, at 1,946,369 to 1,946,959 _RS08765 PFLU_RS08770: PFLU_RS08770 - carbon-phosphorus lyase complex subunit PhnI, at 1,946,959 to 1,948,035 _RS08770
Group Condition PFLU_RS08750 PFLU_RS08755 PFLU_RS08760 PFLU_RS08765 PFLU_RS08770
carbon source propionate 20 mM (C) -0.2 -0.2 -1.9 -1.8 -1.4
nitrogen source nitrate (N); with MOPS -0.2 -0.6 -3.8 +0.1 -0.9
pH Growth at pH9 and (C) Trisodium citrate -0.4 +0.0 -2.3 -0.5 -1.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.4 -0.7 -0.6 -1.0 -0.4
carbon source NAG (C) -0.5 -0.6 -1.9 -0.3 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.8 -0.6 -1.2 -1.7 +0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.2 -0.4 -1.2 -1.7 -0.3
carbon source propionate (C) -0.0 +0.3 -2.4 -0.5 -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -0.1 -2.0 -0.7 -0.2
carbon source octanoate 10 mM (C) -0.2 -0.3 -2.0 -0.9 -0.4
carbon source Glycerol (C) -0.2 -0.0 -2.0 -0.9 -0.5
nitrogen source NAG (N); with MOPS +0.3 +0.1 -2.0 -1.1 -0.8
carbon source NAG (C) -0.7 -0.3 -1.0 -1.0 -0.5
temperature shift Temperature shift 30_to_25; with MOPS -0.0 -0.6 -1.8 -0.7 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 +0.2 -0.9 -1.5 -0.9
carbon source Ferulic Acid (C) 1.5 mM +0.2 -0.8 -1.6 -0.5 -0.6
pH Growth at pH9 and (C) Trisodium citrate +0.4 -0.4 -2.1 -0.6 -0.5
carbon source propionate 20 mM (C) +0.3 +0.1 -1.1 -1.8 -0.6
stress Glucose (C) and L-Glutamine (N); with TAPS; with chloride -0.2 -0.1 -2.5 -0.4 +0.2
carbon source succinate (C) -0.3 -0.2 -2.4 +0.3 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 +0.2 -1.4 -1.8 -0.1
nitrogen source Ammonium chloride (N); with MOPS -0.2 -0.6 -2.0 +0.5 -0.5
carbon source Xanthosine (C) -0.0 -0.3 -2.1 -0.7 +0.4
carbon source 4-Hydroxybenzoic Acid 2 mM (C) +0.4 -0.5 -2.1 -0.7 +0.4
carbon source Shikimic Acid (C) +0.3 -0.1 -1.9 -1.1 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 +0.1 -3.5 +1.0 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 -0.4 +1.6 +0.5 +1.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.0 -0.5 +1.7 +1.4 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.7 +0.6 +1.5 +1.9 +1.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 -0.1 +2.4 +0.9 +0.9
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