Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS08710 and PFLU_RS08715 overlap by 4 nucleotidesPFLU_RS08715 and PFLU_RS08720 are separated by 47 nucleotidesPFLU_RS08720 and PFLU_RS08725 are separated by 13 nucleotidesPFLU_RS08725 and PFLU_RS08730 overlap by 4 nucleotides PFLU_RS08710: PFLU_RS08710 - aminodeoxychorismate synthase component I, at 1,935,383 to 1,937,452 _RS08710 PFLU_RS08715: PFLU_RS08715 - chorismate mutase, at 1,937,449 to 1,937,784 _RS08715 PFLU_RS08720: PFLU_RS08720 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 1,937,832 to 1,939,103 _RS08720 PFLU_RS08725: PFLU_RS08725 - peptide chain release factor N(5)-glutamine methyltransferase, at 1,939,117 to 1,939,977 _RS08725 PFLU_RS08730: PFLU_RS08730 - FAD-dependent oxidoreductase, at 1,939,974 to 1,941,407 _RS08730
Group Condition PFLU_RS08710 PFLU_RS08715 PFLU_RS08720 PFLU_RS08725 PFLU_RS08730
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.4 -0.4 -0.4 -0.4 -0.1
carbon source Shikimic Acid (C) -0.2 +0.4 -0.1 -0.4 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 +0.3 -0.4 +0.1 -0.2
stress Betaine (C)(N); with TAPS; with chloride -0.2 -0.4 +0.1 -0.2 +0.3
carbon source L-Valine (C) -0.1 +0.4 -0.4 -0.1 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 -0.4 -0.1 +0.0 +0.4
carbon source Xanthosine (C) -0.1 +0.5 -0.1 -0.2 -0.2
carbon source Xanthosine (C) -0.2 +0.4 -0.4 +0.1 +0.4
stress Betaine (C)(N); with TAPS; with chloride -0.3 +0.5 -0.0 +0.3 +0.1
stress Betaine (C)(N); with MOPS; with chloride -0.3 +0.1 +0.5 +0.1 +0.2
carbon source Inosine (C) +0.1 +0.4 -0.2 -0.3 +0.6
carbon source D-Glucosamine Hydrochloride 10 mM (C) +0.3 -0.0 +0.0 -0.2 +0.6
stress Betaine (C)(N); with MOPS; with chloride -0.2 +0.4 +0.1 +0.3 +0.2
carbon source 2-Keto-D-gluconic hemicalcium salt (C) +0.2 +0.6 -0.1 +0.2 +0.0
stress Betaine (C)(N); with MOPS; with chloride -0.2 +0.5 +0.3 +0.3 +0.1
carbon source L-Ornithine 10 mM (C) +0.1 +0.4 +0.2 +0.3 +0.1
stress Betaine (C)(N); with MOPS; with chloride +0.2 +0.3 +0.1 +0.3 +0.3
stress Betaine (C)(N); with MOPS; with chloride -0.0 +0.5 +0.3 +0.3 +0.2
stress malate (C) and Ammonium chloride (N); with TAPS +0.3 +0.2 +0.2 +0.2 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +0.3 +0.2 +0.3 +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +0.4 +0.3 +0.1 +0.3
stress malate (C) and Ammonium chloride (N); with TAPS +0.5 +0.4 +0.2 +0.4 +0.5
stress malate (C) and Ammonium chloride (N); with TAPS +0.5 +0.3 +0.4 +0.3 +0.6
stress malate (C) and Ammonium chloride (N); with TAPS +0.5 +0.3 +0.4 +0.4 +0.5
stress Betaine (C)(N); with MOPS; with chloride +0.1 +0.9 +0.5 +0.2 +0.5
stress malate (C) and Ammonium chloride (N); with TAPS +0.5 +0.4 +0.4 +0.4 +0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.6 +0.4 +0.4 +0.5 +0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.6 +0.7 +0.5 +0.4 +0.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.6 +0.2 +0.6 +0.6 +0.9
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.6 +0.5 +0.8 +0.3 +1.1
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