Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS08545 and PFLU_RS08550 are separated by 25 nucleotidesPFLU_RS08550 and PFLU_RS08555 are separated by 8 nucleotidesPFLU_RS08555 and PFLU_RS08560 are separated by 250 nucleotidesPFLU_RS08560 and PFLU_RS08565 are separated by 174 nucleotides PFLU_RS08545: PFLU_RS08545 - GAF domain-containing protein, at 1,904,962 to 1,905,444 _RS08545 PFLU_RS08550: PFLU_RS08550 - transporter substrate-binding domain-containing protein, at 1,905,470 to 1,909,105 _RS08550 PFLU_RS08555: PFLU_RS08555 - response regulator transcription factor, at 1,909,114 to 1,909,740 _RS08555 PFLU_RS08560: PFLU_RS08560 - response regulator, at 1,909,991 to 1,910,392 _RS08560 PFLU_RS08565: PFLU_RS08565 - deoxyguanosinetriphosphate triphosphohydrolase, at 1,910,567 to 1,911,898 _RS08565
Group Condition PFLU_RS08545 PFLU_RS08550 PFLU_RS08555 PFLU_RS08560 PFLU_RS08565
carbon source L-Valine (C) -0.5 -0.1 -0.8 -0.7 -0.4
carbon source butyrate 20 mM (C) -0.1 +0.0 +0.0 +0.3 -2.4
carbon source butyrate 20 mM (C) -0.3 +0.1 -0.1 +0.1 -1.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.0 +0.0 -0.3 -0.8 -0.7
carbon and nitrogen source NAG carbon and (N) -1.0 +0.2 -0.3 -0.4 -0.1
carbon and nitrogen source NAG carbon and (N) -0.9 +0.0 +0.1 -0.2 -0.6
carbon source Shikimic Acid (C) +0.5 -0.1 -0.0 -1.6 -0.2
carbon source Ferulic Acid 2 mM (C) -1.6 +0.0 -0.1 +0.0 +0.2
carbon source Xanthosine (C) +0.3 +0.1 +0.0 -1.6 -0.2
stress L-Glutamine (C)(N); with TAPS; with chloride -1.9 +0.1 +0.2 +0.4 -0.0
nitrogen source nitrate (N) -0.5 +0.1 +0.0 -1.0 +0.3
carbon source butyrate (C) -0.5 +0.0 +0.3 -0.1 -0.9
carbon source L-Valine (C) -1.5 -0.2 +0.8 -0.1 +0.1
carbon source Phloretic Acid 2 mM (C) +0.7 -0.0 -0.4 -1.3 +0.1
pH Growth at pH9 and (C) Trisodium citrate +0.5 +0.1 -0.3 -0.5 -0.6
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -1.3 +0.0 -0.2 +0.6 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -2.1 +0.0 +0.2 +0.9 +0.4
carbon source butyrate (C) +0.7 +0.0 +0.1 -0.2 -0.9
stress Betaine (C)(N); with MOPS; with chloride -0.8 -0.0 -0.3 +0.7 +0.3
carbon source Shikimic Acid (C) +0.7 +0.1 -0.6 +0.1 -0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 -0.0 -0.0 +0.6 +0.5
stress Betaine (C)(N); with MOPS; with chloride +0.8 +0.0 -0.2 -0.7 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.9 +0.0 +0.3 -0.1 -0.5
pH Growth at pH9 and (C) Trisodium citrate +1.0 -0.0 -0.1 +0.3 -0.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.7 -0.0 +0.1 -0.5 +0.4
stress L-Glutamine (C)(N); with MOPS; with chloride +0.9 +0.0 -0.4 +0.0 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +1.2 +0.1 -0.7 +0.7 +0.1
carbon source L-Ornithine (C) +1.2 +0.1 +0.3 +0.3 -0.1
carbon source L-Carnitine (C) +0.7 +0.1 +0.2 +0.4 +0.6
carbon source L-Ornithine (C) +1.0 +0.2 +0.6 +0.2 +0.2
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