Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS08515 and PFLU_RS08520 are separated by 255 nucleotidesPFLU_RS08520 and PFLU_RS08525 are separated by 203 nucleotidesPFLU_RS08525 and PFLU_RS08530 overlap by 4 nucleotidesPFLU_RS08530 and PFLU_RS08535 overlap by 47 nucleotides PFLU_RS08515: PFLU_RS08515 - peptide-methionine (R)-S-oxide reductase MsrB, at 1,898,902 to 1,899,294 _RS08515 PFLU_RS08520: PFLU_RS08520 - IS110 family transposase, at 1,899,550 to 1,900,482 _RS08520 PFLU_RS08525: PFLU_RS08525 - glutathione peroxidase, at 1,900,686 to 1,901,171 _RS08525 PFLU_RS08530: PFLU_RS08530 - MarR family transcriptional regulator, at 1,901,168 to 1,901,647 _RS08530 PFLU_RS08535: PFLU_RS08535 - response regulator, at 1,901,601 to 1,903,910 _RS08535
Group Condition PFLU_RS08515 PFLU_RS08520 PFLU_RS08525 PFLU_RS08530 PFLU_RS08535
carbon source caffeic 2 mM (C) -0.6 N.D. -1.3 +0.2 -1.4
carbon source L-Ornithine 10 mM (C) -0.4 N.D. -0.2 +0.2 -2.3
stress Betaine (C)(N); with MOPS; with chloride +0.0 N.D. -1.2 -0.2 -1.0
carbon source L-Ornithine 10 mM (C) -0.4 N.D. -0.2 +0.4 -2.1
carbon source a-Ketoglutaric 10 mM (C) -0.0 N.D. -0.7 -0.3 -1.1
carbon source 4-Hydroxyphenylpropionic (C) 1.5 mM -0.2 N.D. -0.3 -0.1 -1.6
no stress control Glucose (C) and nitrate (N); with MOPS +0.1 N.D. -0.4 -0.5 -1.3
carbon source 4-Hydroxyphenylpropionic (C) 1.5 mM -0.2 N.D. +0.0 -0.4 -1.5
no stress control Glucose (C) and Ammonium chloride (N); with TAPS -0.4 N.D. +0.1 -0.7 -1.0
carbon source p-Coumaric (C) 5 mM -0.1 N.D. +0.2 -0.1 -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 N.D. -1.5 +0.6 -0.2
stress malate (C) and Ammonium chloride (N); with MOPS +0.1 N.D. +0.1 -0.5 -1.5
stress malate (C) and Ammonium chloride (N); with MOPS +0.1 N.D. +0.4 -0.1 -2.0
carbon source L-Ornithine 10 mM (C) -0.2 N.D. -0.3 +0.6 -1.7
carbon source p-Coumaric (C) 5 mM -0.3 N.D. +0.3 -0.0 -1.7
carbon source L-Ornithine (C) -0.3 N.D. +0.5 +0.1 -1.8
carbon source Sucrose 5 mM (C) -0.2 N.D. -0.5 +0.5 -1.1
no stress control Glucose (C) and nitrate (N); with MOPS -0.4 N.D. +0.4 +0.0 -1.3
stress malate (C) and Ammonium chloride (N); with MOPS +0.1 N.D. +0.3 -0.2 -1.6
no stress control Glucose (C) and Ammonium chloride (N); with MOPS +0.2 N.D. +0.4 -0.4 -1.4
carbon source Choline chloride 10 mM (C) -0.6 N.D. -0.6 +0.6 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.5 N.D. -1.0 +0.1 -0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 N.D. +0.4 -0.7 -0.9
pH Growth at pH8 and (C) Trisodium citrate +0.1 N.D. -1.3 +0.6 -0.3
stress Betaine (C)(N); with MOPS; with chloride -0.2 N.D. -0.4 +0.7 -0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.5 N.D. +0.7 -0.7 -0.8
carbon source p-Coumaric (C) 5 mM +0.2 N.D. +0.4 +0.8 -1.5
carbon source NAG (C) -0.5 N.D. +0.5 -0.7 +0.7
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.0 N.D. +1.1 -0.1 +0.2
carbon source L-Valine 10 mM (C) -0.3 N.D. +0.4 -0.7 +0.8
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