Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS08480 and PFLU_RS08485 are separated by 103 nucleotidesPFLU_RS08485 and PFLU_RS08490 are separated by 423 nucleotidesPFLU_RS08490 and PFLU_RS08495 are separated by 124 nucleotidesPFLU_RS08495 and PFLU_RS08500 are separated by 103 nucleotides PFLU_RS08480: PFLU_RS08480 - hypothetical protein, at 1,889,592 to 1,890,347 _RS08480 PFLU_RS08485: PFLU_RS08485 - crotonase/enoyl-CoA hydratase family protein, at 1,890,451 to 1,891,242 _RS08485 PFLU_RS08490: PFLU_RS08490 - DEAD/DEAH box helicase, at 1,891,666 to 1,893,339 _RS08490 PFLU_RS08495: PFLU_RS08495 - dioxygenase, at 1,893,464 to 1,894,231 _RS08495 PFLU_RS08500: PFLU_RS08500 - thiopurine S-methyltransferase, at 1,894,335 to 1,894,991 _RS08500
Group Condition PFLU_RS08480 PFLU_RS08485 PFLU_RS08490 PFLU_RS08495 PFLU_RS08500
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.6 -1.6 -2.3 -1.5 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 -1.0 -4.3 -0.5 +0.1
carbon source Inosine (C) -0.2 -4.5 -0.7 -0.1 -0.1
no stress control Sucrose (C) and Glycine betaine (N); with TAPS -0.0 -1.3 -3.8 -0.2 -0.2
stress Betaine (C)(N); with TAPS; with chloride -0.2 -2.6 -2.0 -0.3 -0.1
no stress control Glycine betaine (C)(N); with TAPS -0.3 -0.3 -3.9 -0.8 +0.2
stress Betaine (C)(N); with TAPS; with chloride -0.1 -1.6 -3.5 -0.2 +0.3
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.3 -2.7 -1.2 +0.1 -0.5
carbon source L-tyrosine 10 mM (C) -0.6 -4.0 +0.6 -0.5 -0.0
carbon source Phloretic Acid 2 mM (C) +0.1 -0.8 -3.6 -0.7 +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.0 -1.4 -3.7 +0.4 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.8 -3.7 +0.1 +0.2
no stress control Glycine betaine (C)(N); with MOPS +0.5 -1.3 -3.7 -0.0 +0.1
carbon source pyruvate 20 mM (C) +0.2 -1.0 -3.4 +0.2 -0.3
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.2 -2.1 -1.9 -0.1 +0.1
carbon source Shikimic Acid (C) -0.9 -0.6 -3.3 +0.8 +0.0
stress Betaine (C)(N); with TAPS; with chloride -0.3 +0.3 -2.6 -1.3 -0.1
no stress control Glucose (C) and L-Glutamine (N); with TAPS +0.2 -1.0 -3.3 +0.4 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 -0.2 -3.8 +0.1 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.2 -0.1 -3.8 +0.2 +0.1
stress malate (C) and Ammonium chloride (N); with TAPS -0.2 +0.4 -3.6 -0.3 +0.1
stress Betaine (C)(N); with TAPS; with chloride -0.7 +0.4 -2.5 -0.4 +0.2
carbon source L-Carnitine (C) +0.2 -3.0 +0.3 +0.0 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.0 +0.6 -3.2 -0.2 -0.1
carbon source propionate 20 mM (C) +0.1 -1.1 -2.2 +1.1 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -2.6 +1.0 -0.3 -0.3
stress Betaine (C)(N); with MOPS; with chloride +0.1 -2.0 +1.8 +0.0 -0.1
pH Growth at pH7 and (C) D-Glucose -0.1 +0.5 +1.8 -1.5 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 -0.6 +2.7 +0.4 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 +0.4 +2.5 +0.6 +0.1
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