Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS08455 and PFLU_RS08460 overlap by 11 nucleotidesPFLU_RS08460 and PFLU_RS08465 are separated by 16 nucleotidesPFLU_RS08465 and PFLU_RS08470 are separated by 45 nucleotidesPFLU_RS08470 and PFLU_RS08475 are separated by 131 nucleotides PFLU_RS08455: PFLU_RS08455 - sulfite exporter TauE/SafE family protein, at 1,884,817 to 1,885,566 _RS08455 PFLU_RS08460: PFLU_RS08460 - LysR family transcriptional regulator, at 1,885,556 to 1,886,410 _RS08460 PFLU_RS08465: PFLU_RS08465 - DUF1127 domain-containing protein, at 1,886,427 to 1,886,714 _RS08465 PFLU_RS08470: PFLU_RS08470 - winged helix-turn-helix domain-containing protein, at 1,886,760 to 1,887,989 _RS08470 PFLU_RS08475: PFLU_RS08475 - 3-deoxy-7-phosphoheptulonate synthase class II, at 1,888,121 to 1,889,467 _RS08475
Group Condition PFLU_RS08455 PFLU_RS08460 PFLU_RS08465 PFLU_RS08470 PFLU_RS08475
carbon source acetate 30 mM (C) -0.2 -0.5 -0.8 -0.1 -0.4
stress Betaine (C)(N); with TAPS; with chloride -0.5 -0.1 -1.3 +0.2 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 -0.7 -0.5 +0.0 -0.1
carbon source L-tyrosine 10 mM (C) -0.3 -0.0 +0.1 -0.0 -1.4
no stress control Sucrose (C) and Glycine betaine (N); with MOPS -0.5 -0.1 -0.6 -0.1 -0.3
nitrogen source NAG (N); with MOPS +0.1 -0.6 -0.9 -0.3 +0.1
carbon source p-Coumaric 2 mM (C) -0.6 -0.6 -0.4 +0.1 -0.0
carbon and nitrogen source NAG carbon and (N) -0.2 +0.0 -0.7 -0.2 -0.5
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.2 -0.2 -0.9 -0.2 +0.1
carbon source L-tyrosine 10 mM (C) +0.1 -0.4 -0.2 +0.0 -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 -0.4 -1.1 -0.1 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 -0.0 -1.1 +0.1 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 +0.6 -0.6 -0.5 -0.5
carbon source propionate 20 mM (C) -0.8 +0.2 -0.1 -0.3 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.1 +0.3 +0.4 -0.4 -0.2
carbon source L-Valine 10 mM (C) -1.1 +0.1 +0.2 -0.1 -0.1
stress Betaine (C)(N); with TAPS; with chloride -0.4 -0.7 -0.3 +0.2 +0.3
stress Betaine (C)(N); with MOPS; with chloride -0.2 +0.3 -0.8 -0.1 +0.1
stress Betaine (C)(N); with MOPS; with chloride -0.6 -0.4 +0.5 -0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 +0.4 -0.4 -0.2 +0.0
carbon source acetate (C) -0.7 +0.2 +0.4 -0.1 -0.3
carbon source D-Trehalose (C) -0.3 +0.3 -0.6 +0.0 +0.2
carbon source m-Inositol (C) -0.5 +0.4 -0.3 +0.1 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.5 -0.1 -1.1 +0.2 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 -0.6 -0.4 +0.4 +0.2
carbon source Inosine 10 mM (C) -0.2 +0.3 -0.7 +0.1 +0.3
carbon source D-Glucuronic (C) -0.8 +0.3 +0.1 +0.2 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 -0.3 +0.9 -0.0 +0.1
carbon source L-Carnitine (C) +0.6 -0.3 +0.3 +0.1 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.7 +0.7 +0.3 +0.1 +0.2
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