Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS08295 and PFLU_RS08300 are separated by 96 nucleotidesPFLU_RS08300 and PFLU_RS08305 are separated by 235 nucleotidesPFLU_RS08305 and PFLU_RS08310 are separated by 103 nucleotidesPFLU_RS08310 and PFLU_RS08315 are separated by 250 nucleotides PFLU_RS08295: PFLU_RS08295 - methyl-accepting chemotaxis protein, at 1,856,137 to 1,857,618 _RS08295 PFLU_RS08300: PFLU_RS08300 - preprotein translocase subunit TatD, at 1,857,715 to 1,858,521 _RS08300 PFLU_RS08305: PFLU_RS08305 - transglycosylase SLT domain-containing protein, at 1,858,757 to 1,860,178 _RS08305 PFLU_RS08310: PFLU_RS08310 - DoxX family protein, at 1,860,282 to 1,860,716 _RS08310 PFLU_RS08315: PFLU_RS08315 - hypothetical protein, at 1,860,967 to 1,861,275 _RS08315
Group Condition PFLU_RS08295 PFLU_RS08300 PFLU_RS08305 PFLU_RS08310 PFLU_RS08315
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.0 -0.9 -0.2 -0.9 N.D.
carbon source Shikimic Acid (C) -0.4 -0.0 -0.1 -1.3 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.6 -0.3 -0.2 -0.6 N.D.
carbon source L-Carnitine (C) -1.3 -0.3 +0.0 -0.2 N.D.
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -1.2 -0.2 +0.1 -0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 +0.1 +0.1 -1.1 N.D.
stress Betaine (C)(N); with MOPS; with chloride -0.5 +0.2 -0.1 -1.0 N.D.
carbon source acetate 30 mM (C) -1.1 -0.3 +0.0 +0.1 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -0.1 -0.2 -1.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9 -0.4 +0.1 +0.1 N.D.
pH Growth at pH9 and (C) Trisodium citrate -0.3 -0.5 +0.3 -0.6 N.D.
stress Betaine (C)(N); with MOPS; with chloride -1.1 -0.1 -0.0 +0.2 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.9 -0.6 +0.3 +0.3 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.9 +0.2 -0.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.1 +0.1 +0.2 -0.0 N.D.
carbon source Inosine (C) +0.5 -1.1 +0.1 -0.1 N.D.
carbon source succinate (C) -0.9 -0.2 +0.1 +0.4 N.D.
nitrogen source no extra (N); with MOPS -0.6 +0.1 +0.3 -0.4 N.D.
carbon source L-Valine (C) +0.4 -0.1 +0.1 -0.9 N.D.
stress L-Glutamine (C)(N); with MOPS; with chloride -0.9 +0.4 -0.3 +0.4 N.D.
carbon source caffeic 2 mM (C) -0.6 +0.5 +0.2 -0.4 N.D.
carbon and nitrogen source NAG carbon and (N); with MOPS -0.2 -0.7 +0.4 +0.3 N.D.
carbon source L-Valine (C) +0.8 +0.5 +0.0 -1.4 N.D.
carbon source L-Arabinose (C); with MOPS -0.7 -0.3 +0.5 +0.4 N.D.
carbon source NAG (C) +0.3 -0.8 +0.5 +0.3 N.D.
carbon source p-Coumaric 2 mM (C) -0.6 +0.4 +0.1 +0.5 N.D.
pH Growth at pH8 and (C) Trisodium citrate +0.3 -0.5 +0.5 +0.2 N.D.
nitrogen source nitrate (N); with MOPS -0.4 +0.1 +0.5 +0.7 N.D.
carbon source Phloretic Acid 2 mM (C) +0.9 +0.4 +0.3 -0.4 N.D.
carbon source 4-Aminobutyric (C) +0.4 +0.2 +0.3 +0.7 N.D.
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