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Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS08180 and PFLU_RS08185 are separated by 48 nucleotides
PFLU_RS08185 and PFLU_RS08190 are separated by 392 nucleotides
PFLU_RS08190 and PFLU_RS08195 are separated by 110 nucleotides
PFLU_RS08195 and PFLU_RS08200 are separated by 21 nucleotides
PFLU_RS08180: PFLU_RS08180 - ketoacyl-ACP synthase III, at 1,828,674 to 1,829,690
_RS08180
PFLU_RS08185: PFLU_RS08185 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 1,829,739 to 1,830,917
_RS08185
PFLU_RS08190: PFLU_RS08190 - polysaccharide biosynthesis protein, at 1,831,310 to 1,833,304
_RS08190
PFLU_RS08195: PFLU_RS08195 - ComEA family DNA-binding protein, at 1,833,415 to 1,833,747
_RS08195
PFLU_RS08200: PFLU_RS08200 - TetR/AcrR family transcriptional regulator, at 1,833,769 to 1,834,347
_RS08200
Group
Condition
PFLU
_RS08180
PFLU
_RS08185
PFLU
_RS08190
PFLU
_RS08195
PFLU
_RS08200
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with PEG
-2.7
-3.4
-2.9
N.D.
+0.1
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with PEG
-2.7
-2.9
-2.4
N.D.
+0.1
stress
malate (C) and Ammonium chloride (N); with TAPS
-3.7
-2.9
-1.3
N.D.
+0.1
stress
Sucrose (C) and Ammonium chloride (N); with MOPS; with PEG
-2.0
-3.1
-2.4
N.D.
-0.1
stress
Sucrose (C) and L-Glutamine (N); with MOPS; with PEG
-2.9
-2.7
-1.6
N.D.
-0.3
stress
malate (C) and Ammonium chloride (N); with TAPS
-2.5
-3.4
-1.6
N.D.
+0.1
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with PEG
-2.2
-3.2
-2.1
N.D.
+0.1
stress
malate (C) and Ammonium chloride (N); with MOPS
-2.4
-3.4
-1.6
N.D.
+0.1
stress
Sucrose (C) and L-Glutamine (N); with MOPS; with PEG
-2.3
-2.8
-2.0
N.D.
-0.1
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+2.5
+3.3
+1.7
N.D.
+0.0
carbon source
Ferulic Acid 2 mM (C)
+2.7
+3.3
+1.7
N.D.
+0.1
carbon source
Ferulic Acid 2 mM (C)
+3.2
+3.3
+1.7
N.D.
-0.4
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+3.1
+3.2
+1.8
N.D.
-0.0
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+2.8
+3.4
+2.0
N.D.
-0.0
carbon source
Ferulic Acid 2 mM (C)
+3.3
+3.7
+1.9
N.D.
-0.6
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+3.4
+3.4
+1.8
N.D.
+0.2
carbon source
p-Coumaric 2 mM (C)
+3.4
+3.6
+2.2
N.D.
-0.3
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+3.0
+3.6
+2.2
N.D.
+0.1
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+3.6
+3.7
+2.1
N.D.
-0.0
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+3.3
+3.7
+2.1
N.D.
+0.3
carbon source
p-Coumaric 2 mM (C)
+3.5
+3.8
+2.2
N.D.
+0.3
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+3.1
+4.1
+2.6
N.D.
+0.1
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+5.2
+5.0
+2.7
N.D.
-0.2
carbon source
p-Coumaric (C) 5 mM
+4.4
+5.7
+3.4
N.D.
-0.2
carbon source
p-Coumaric (C) 5 mM
+4.5
+5.9
+3.3
N.D.
-0.2
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+5.8
+5.3
+2.8
N.D.
-0.2
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+5.9
+5.2
+3.0
N.D.
-0.3
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+5.8
+5.4
+2.8
N.D.
+0.0
carbon source
p-Coumaric (C) 5 mM
+4.9
+6.0
+3.4
N.D.
+0.1
carbon source
p-Coumaric (C) 5 mM
+5.0
+6.3
+3.6
N.D.
-0.3
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