Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS08045 and PFLU_RS08050 overlap by 4 nucleotidesPFLU_RS08050 and PFLU_RS08055 are separated by 32 nucleotidesPFLU_RS08055 and PFLU_RS08060 are separated by 68 nucleotidesPFLU_RS08060 and PFLU_RS30495 overlap by 8 nucleotides PFLU_RS08045: PFLU_RS08045 - ABC transporter ATP-binding protein, at 1,792,874 to 1,793,830 _RS08045 PFLU_RS08050: PFLU_RS08050 - ABC transporter ATP-binding protein, at 1,793,827 to 1,794,798 _RS08050 PFLU_RS08055: PFLU_RS08055 - ABC transporter substrate-binding protein, at 1,794,831 to 1,796,345 _RS08055 PFLU_RS08060: PFLU_RS08060 - YciK family oxidoreductase, at 1,796,414 to 1,797,154 _RS08060 PFLU_RS30495: PFLU_RS30495 - hypothetical protein, at 1,797,147 to 1,797,326 _RS30495
Group Condition PFLU_RS08045 PFLU_RS08050 PFLU_RS08055 PFLU_RS08060 PFLU_RS30495
carbon source Phloretic Acid 2 mM (C) -0.2 -0.7 -0.3 -1.8 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.3 -0.1 +0.1 -2.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.1 -0.2 -0.2 -1.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.2 +0.0 -0.0 -1.7 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.4 -0.2 -1.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.2 -0.0 +0.0 -1.4 N.D.
carbon source L-Lysine (C) +0.1 -0.2 +0.2 -1.7 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.1 -0.0 -0.0 -1.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.1 +0.3 -0.2 -1.5 N.D.
carbon source Inosine (C) +0.1 -0.4 -0.2 -1.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.1 +0.2 +0.0 -1.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.3 -0.2 +0.1 -1.0 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 -0.3 +0.3 -1.4 N.D.
carbon source Choline chloride 10 mM (C) +0.3 +0.0 -0.0 -1.6 N.D.
stress L-Glutamine (C)(N); with TAPS; with chloride +0.0 -0.3 +0.2 -1.0 N.D.
carbon source Choline chloride (C) +0.2 -0.2 -0.2 -0.8 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.1 +0.2 -0.2 -1.0 N.D.
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) +0.5 -0.3 +0.0 -0.8 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +0.3 +0.2 -0.9 N.D.
carbon source L-Valine 10 mM (C) -0.7 +0.2 -0.0 +0.6 N.D.
carbon source L-Valine (C) -0.2 -0.5 +0.3 +0.8 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 -0.2 -0.0 +1.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 -0.4 -0.0 +1.0 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 +0.2 -0.0 +1.3 N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 -0.2 +0.1 +1.1 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.0 +0.3 +0.2 +1.1 N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +0.3 +0.4 +0.8 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 +0.4 +0.1 +1.0 N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +0.6 +0.1 +0.9 N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.7 +0.0 +0.1 +1.3 N.D.
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